Information for 6-AGGGAATTGC (Motif 6)

C T G A A C T G A C T G A C T G G C T A T C G A A C G T A C G T C A T G G T A C
Reverse Opposite:
A C T G G T A C G T C A T G C A A G C T C G A T A G T C A G T C A G T C A G C T
p-value:1e-12
log p-value:-2.849e+01
Information Content per bp:1.734
Number of Target Sequences with motif39.0
Percentage of Target Sequences with motif4.35%
Number of Background Sequences with motif499.8
Percentage of Background Sequences with motif1.06%
Average Position of motif in Targets50.4 +/- 26.0bp
Average Position of motif in Background50.6 +/- 28.8bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:1
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:AGGGAATTGC-
-GGGAATTTCC
 C T G A A C T G A C T G A C T G G C T A T C G A A C G T A C G T C A T G G T A C A C G T
A C G T A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C

MF0003.1_REL_class/Jaspar

Match Rank:2
Score:0.73
Offset:1
Orientation:forward strand
Alignment:AGGGAATTGC-
-GGGGATTTCC
 C T G A A C T G A C T G A C T G G C T A T C G A A C G T A C G T C A T G G T A C A C G T
A C G T A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C

RELA/MA0107.1/Jaspar

Match Rank:3
Score:0.73
Offset:1
Orientation:forward strand
Alignment:AGGGAATTGC-
-GGGAATTTCC
 C T G A A C T G A C T G A C T G G C T A T C G A A C G T A C G T C A T G G T A C A C G T
A C G T A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:4
Score:0.70
Offset:0
Orientation:forward strand
Alignment:AGGGAATTGC--
NGGGGATTTCCC
 C T G A A C T G A C T G A C T G G C T A T C G A A C G T A C G T C A T G G T A C A C G T A C G T
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C

GFY(?)/Promoter/Homer

Match Rank:5
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:AGGGAATTGC---
-GGGAATTGTAGT
 C T G A A C T G A C T G A C T G G C T A T C G A A C G T A C G T C A T G G T A C A C G T A C G T A C G T
A C G T C A T G T C A G T C A G T C G A T C G A G C A T A C G T A C T G A C G T C T G A A T C G A C G T

REL/MA0101.1/Jaspar

Match Rank:6
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AGGGAATTGC
GGGGATTTCC
 C T G A A C T G A C T G A C T G G C T A T C G A A C G T A C G T C A T G G T A C
A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C

NFKB2/MA0778.1/Jaspar

Match Rank:7
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:AGGGAATTGC---
AGGGGAATCCCCT
 C T G A A C T G A C T G A C T G G C T A T C G A A C G T A C G T C A T G G T A C A C G T A C G T A C G T
T C G A C T A G C A T G C A T G C T A G C T G A C G T A A C G T G A T C G T A C G T A C A G T C A C G T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:8
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:AGGGAATTGC---
-GGGGATTCCCCC
 C T G A A C T G A C T G A C T G G C T A T C G A A C G T A C G T C A T G G T A C A C G T A C G T A C G T
A C G T A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C

LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer

Match Rank:9
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--AGGGAATTGC
NRRGGGTCTT--
 A C G T A C G T C T G A A C T G A C T G A C T G G C T A T C G A A C G T A C G T C A T G G T A C
A C T G T C G A C T A G A C T G A C T G A C T G A C G T A G T C A C G T A G C T A C G T A C G T

KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer

Match Rank:10
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AGGGAATTGC
DGGGYGKGGC
 C T G A A C T G A C T G A C T G G C T A T C G A A C G T A C G T C A T G G T A C
C G T A C T A G A C T G A C T G G A C T C T A G C A G T C T A G C A T G G A T C