Information for 6-GACAATTTAT (Motif 10)

C A T G T G C A A T G C C G T A T C G A A C G T C G A T A C G T C G T A A C G T
Reverse Opposite:
G T C A A C G T C G T A C G T A C G T A A C G T A C G T A T C G A C G T G T A C
p-value:1e-8
log p-value:-1.885e+01
Information Content per bp:1.811
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.28%
Number of Background Sequences with motif53.9
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets37.9 +/- 30.6bp
Average Position of motif in Background58.8 +/- 28.4bp
Strand Bias (log2 ratio + to - strand density)-1.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0175.1_Sox4_2/Jaspar

Match Rank:1
Score:0.76
Offset:-5
Orientation:reverse strand
Alignment:-----GACAATTTAT--
TNCNNAACAATTTTTNC
 A C G T A C G T A C G T A C G T A C G T C A T G T G C A A T G C C G T A T C G A A C G T C G A T A C G T C G T A A C G T A C G T A C G T
G A C T G A C T G A T C A T G C G A C T C T G A C G T A A G T C C G T A C T G A G A C T G A C T G A C T G A C T C G A T A G T C A T G C

PB0165.1_Sox11_2/Jaspar

Match Rank:2
Score:0.72
Offset:-5
Orientation:reverse strand
Alignment:-----GACAATTTAT
NNCNNAACAATTNT-
 A C G T A C G T A C G T A C G T A C G T C A T G T G C A A T G C C G T A T C G A A C G T C G A T A C G T C G T A A C G T
G C A T G A C T A G T C G T C A C G A T C T G A C G T A A G T C C G T A T C G A A G C T G A C T G A C T G C A T A C G T

PB0066.1_Sox17_1/Jaspar

Match Rank:3
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---GACAATTTAT--
ATAAACAATTAAACA
 A C G T A C G T A C G T C A T G T G C A A T G C C G T A T C G A A C G T C G A T A C G T C G T A A C G T A C G T A C G T
T G C A C G A T C T G A C G T A C G T A A G T C C G T A C G T A C G A T C G A T T C G A G C T A G C A T G A T C C G T A

PB0074.1_Sox8_1/Jaspar

Match Rank:4
Score:0.70
Offset:-5
Orientation:reverse strand
Alignment:-----GACAATTTAT--
TNNAGAACAATANATNN
 A C G T A C G T A C G T A C G T A C G T C A T G T G C A A T G C C G T A T C G A A C G T C G A T A C G T C G T A A C G T A C G T A C G T
G C A T G C T A G T C A C G T A C A T G C T G A C G T A A G T C C G T A C T G A C G A T C G T A T C A G G C T A G C A T G T C A G T A C

CDX1/MA0878.1/Jaspar

Match Rank:5
Score:0.68
Offset:4
Orientation:reverse strand
Alignment:GACAATTTAT---
----TTTTATTGC
 C A T G T G C A A T G C C G T A T C G A A C G T C G A T A C G T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C

PB0063.1_Sox13_1/Jaspar

Match Rank:6
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----GACAATTTAT-
TTAAGAACAATAAATT
 A C G T A C G T A C G T A C G T A C G T C A T G T G C A A T G C C G T A T C G A A C G T C G A T A C G T C G T A A C G T A C G T
C G A T G A C T C G T A C T G A C A T G C T G A C G T A G A T C C G T A C T G A G C A T C G T A C G T A C G A T G C A T G C A T

PB0173.1_Sox21_2/Jaspar

Match Rank:7
Score:0.67
Offset:-6
Orientation:reverse strand
Alignment:------GACAATTTAT-
NNNNNGAACAATTGANN
 A C G T A C G T A C G T A C G T A C G T A C G T C A T G T G C A A T G C C G T A T C G A A C G T C G A T A C G T C G T A A C G T A C G T
A G C T G T C A C T A G G T A C A C T G T A C G T C G A C G T A A T G C C G T A T C G A G C A T C G A T T A C G T C G A A G C T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:8
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:GACAATTTAT----
--DGWTTTATGRCN
 C A T G T G C A A T G C C G T A T C G A A C G T C G A T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:9
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:GACAATTTAT---
---NTTTTATGAC
 C A T G T G C A A T G C C G T A T C G A A C G T C G A T A C G T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C

PH0013.1_Cdx2/Jaspar

Match Rank:10
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GACAATTTAT-------
-NAATTTTATTACCNNN
 C A T G T G C A A T G C C G T A T C G A A C G T C G A T A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T