Information for 3-SCAGAGGGCSCTGCAG (Motif 2)

A T G C A G T C G C T A A T C G T C G A C A T G T C A G A T C G T G A C T A C G A T G C G C A T T A C G T A G C C G T A A T C G
Reverse Opposite:
A T G C C G A T A T C G A G T C C G T A T A C G A T G C A C T G A T G C A G T C G T A C A G C T A T G C C G A T T A C G T A C G
p-value:1e-19
log p-value:-4.547e+01
Information Content per bp:1.623
Number of Target Sequences with motif47.0
Percentage of Target Sequences with motif5.71%
Number of Background Sequences with motif493.5
Percentage of Background Sequences with motif1.03%
Average Position of motif in Targets45.6 +/- 24.1bp
Average Position of motif in Background52.3 +/- 31.1bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----SCAGAGGGCSCTGCAG
GCCASCAGGGGGCGCYVNNG
 A C G T A C G T A C G T A C G T A T G C A G T C G C T A A T C G T C G A C A T G T C A G A T C G T G A C T A C G A T G C G C A T T A C G T A G C C G T A A T C G
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:2
Score:0.57
Offset:2
Orientation:forward strand
Alignment:SCAGAGGGCSCTGCAG
--RGKGGGCGGAGC--
 A T G C A G T C G C T A A T C G T C G A C A T G T C A G A T C G T G A C T A C G A T G C G C A T T A C G T A G C C G T A A T C G
A C G T A C G T C T G A T C A G C A G T C T A G A C T G C T A G G A T C A T C G A C T G C T G A T C A G G A T C A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:3
Score:0.56
Offset:4
Orientation:forward strand
Alignment:SCAGAGGGCSCTGCAG---
----GGCCYCCTGCTGDGH
 A T G C A G T C G C T A A T C G T C G A C A T G T C A G A T C G T G A C T A C G A T G C G C A T T A C G T A G C C G T A A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

PB0091.1_Zbtb3_1/Jaspar

Match Rank:4
Score:0.56
Offset:3
Orientation:forward strand
Alignment:SCAGAGGGCSCTGCAG----
---AATCGCACTGCATTCCG
 A T G C A G T C G C T A A T C G T C G A C A T G T C A G A T C G T G A C T A C G A T G C G C A T T A C G T A G C C G T A A T C G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G

CTCF/MA0139.1/Jaspar

Match Rank:5
Score:0.56
Offset:-6
Orientation:forward strand
Alignment:------SCAGAGGGCSCTGCAG
TGGCCACCAGGGGGCGCTA---
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C G C T A A T C G T C G A C A T G T C A G A T C G T G A C T A C G A T G C G C A T T A C G T A G C C G T A A T C G
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A A C G T A C G T A C G T

INSM1/MA0155.1/Jaspar

Match Rank:6
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--SCAGAGGGCSCTGCAG
TGTCAGGGGGCG------
 A C G T A C G T A T G C A G T C G C T A A T C G T C G A C A T G T C A G A T C G T G A C T A C G A T G C G C A T T A C G T A G C C G T A A T C G
C A G T A C T G A G C T G T A C C G T A A C T G A T C G A C T G A C T G A C T G G A T C C T A G A C G T A C G T A C G T A C G T A C G T A C G T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.54
Offset:10
Orientation:reverse strand
Alignment:SCAGAGGGCSCTGCAG--
----------CAGCTGNT
 A T G C A G T C G C T A A T C G T C G A C A T G T C A G A T C G T G A C T A C G A T G C G C A T T A C G T A G C C G T A A T C G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T A C C G T A A C T G T G A C C G A T A C T G A G T C G A C T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:8
Score:0.53
Offset:-6
Orientation:reverse strand
Alignment:------SCAGAGGGCSCTGCAG
TGGCCACCAGGTGGCACTNT--
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C G C T A A T C G T C G A C A T G T C A G A T C G T G A C T A C G A T G C G C A T T A C G T A G C C G T A A T C G
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.53
Offset:8
Orientation:forward strand
Alignment:SCAGAGGGCSCTGCAG----
--------CACAGCAGGGGG
 A T G C A G T C G C T A A T C G T C G A C A T G T C A G A T C G T G A C T A C G A T G C G C A T T A C G T A G C C G T A A T C G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

GFY(?)/Promoter/Homer

Match Rank:10
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:SCAGAGGGCSCTGCAG-
-----GGGAATTGTAGT
 A T G C A G T C G C T A A T C G T C G A C A T G T C A G A T C G T G A C T A C G A T G C G C A T T A C G T A G C C G T A A T C G A C G T
A C G T A C G T A C G T A C G T A C G T C A T G T C A G T C A G T C G A T C G A G C A T A C G T A C T G A C G T C T G A A T C G A C G T