Information for 10-AAAGCCATCCATC (Motif 11)

C T G A T C G A C T G A A C T G A T G C G T A C G C T A A C G T A G T C A G T C G T C A C A G T A T G C
Reverse Opposite:
A T C G G C T A A C G T A C T G A C T G C G T A C A G T A C T G A T C G A G T C A G C T A G C T A G C T
p-value:1e-11
log p-value:-2.559e+01
Information Content per bp:1.798
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.26%
Number of Background Sequences with motif19.4
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets64.3 +/- 22.3bp
Average Position of motif in Background49.0 +/- 33.2bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:1
Score:0.66
Offset:3
Orientation:forward strand
Alignment:AAAGCCATCCATC--
---GYCATCMATCAT
 C T G A T C G A C T G A A C T G A T G C G T A C G C T A A C G T A G T C A G T C G T C A C A G T A T G C A C G T A C G T
A C G T A C G T A C G T T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:2
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:AAAGCCATCCATC-
--RGCCATYAATCA
 C T G A T C G A C T G A A C T G A T G C G T A C G C T A A C G T A G T C A G T C G T C A C A G T A T G C A C G T
A C G T A C G T C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A

PB0029.1_Hic1_1/Jaspar

Match Rank:3
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--AAAGCCATCCATC-
ACTATGCCAACCTACC
 A C G T A C G T C T G A T C G A C T G A A C T G A T G C G T A C G C T A A C G T A G T C A G T C G T C A C A G T A T G C A C G T
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---AAAGCCATCCATC
AGAAATGACTTCCCT-
 A C G T A C G T A C G T C T G A T C G A C T G A A C T G A T G C G T A C G C T A A C G T A G T C A G T C G T C A C A G T A T G C
C T G A C T A G T G C A C T G A T C G A A G C T C A T G T C G A A G T C G A C T A C G T A G T C G A T C G A T C G A C T A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:5
Score:0.56
Offset:3
Orientation:forward strand
Alignment:AAAGCCATCCATC-
---GCCATAAATCA
 C T G A T C G A C T G A A C T G A T G C G T A C G C T A A C G T A G T C A G T C G T C A C A G T A T G C A C G T
A C G T A C G T A C G T T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:6
Score:0.54
Offset:2
Orientation:forward strand
Alignment:AAAGCCATCCATC-
--GGCCATAAATCA
 C T G A T C G A C T G A A C T G A T G C G T A C G C T A A C G T A G T C A G T C G T C A C A G T A T G C A C G T
A C G T A C G T C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.54
Offset:2
Orientation:forward strand
Alignment:AAAGCCATCCATC
--GGCCATTAAC-
 C T G A T C G A C T G A A C T G A T G C G T A C G C T A A C G T A G T C A G T C G T C A C A G T A T G C
A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T

Hic1/MA0739.1/Jaspar

Match Rank:8
Score:0.53
Offset:1
Orientation:forward strand
Alignment:AAAGCCATCCATC
-ATGCCAACC---
 C T G A T C G A C T G A A C T G A T G C G T A C G C T A A C G T A G T C A G T C G T C A C A G T A T G C
A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T A C G T

PBX1/MA0070.1/Jaspar

Match Rank:9
Score:0.52
Offset:4
Orientation:forward strand
Alignment:AAAGCCATCCATC---
----CCATCAATCAAA
 C T G A T C G A C T G A A C T G A T G C G T A C G C T A A C G T A G T C A G T C G T C A C A G T A T G C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:10
Score:0.52
Offset:2
Orientation:forward strand
Alignment:AAAGCCATCCATC-
--GGCCATAAATCA
 C T G A T C G A C T G A A C T G A T G C G T A C G C T A A C G T A G T C A G T C G T C A C A G T A T G C A C G T
A C G T A C G T C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A