Information for 2-TCGGCACAGGGCC (Motif 2)

A C G T A G T C A C T G A C T G A G T C C G T A A T G C C G T A A C T G A C T G A C T G A G T C G T A C
Reverse Opposite:
A C T G A C T G A G T C A G T C A G T C A C G T A T C G A C G T A C T G A G T C G T A C A C T G G T C A
p-value:1e-11
log p-value:-2.604e+01
Information Content per bp:1.939
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.64%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets57.3 +/- 24.7bp
Average Position of motif in Background69.3 +/- 10.8bp
Strand Bias (log2 ratio + to - strand density)-2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MTF1/MA0863.1/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TCGGCACAGGGCC-
TTTGCACACGGCAC
 A C G T A G T C A C T G A C T G A G T C C G T A A T G C C G T A A C T G A C T G A C T G A G T C G T A C A C G T
C A G T A C G T G A C T T C A G G T A C C G T A T A G C G T C A A G T C C A T G C A T G A G T C T G C A G A T C

PB0044.1_Mtf1_1/Jaspar

Match Rank:2
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--TCGGCACAGGGCC-
NNTTTGCACACGGCCC
 A C G T A C G T A C G T A G T C A C T G A C T G A G T C C G T A A T G C C G T A A C T G A C T G A C T G A G T C G T A C A C G T
C G A T G A C T C A G T A C G T G A C T A C T G G A T C C T G A A G T C G C T A G A T C A C T G C T A G G A T C T A G C G T A C

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TCGGCACAGGGCC---
TTGGCANNNTGCCAAG
 A C G T A G T C A C T G A C T G A G T C C G T A A T G C C G T A A C T G A C T G A C T G A G T C G T A C A C G T A C G T A C G T
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

POL009.1_DCE_S_II/Jaspar

Match Rank:4
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:TCGGCACAGGGCC
----CACAGN---
 A C G T A G T C A C T G A C T G A G T C C G T A A T G C C G T A A C T G A C T G A C T G A G T C G T A C
A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:5
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TCGGCACAGGGCC-
TTGGCATGGTGCCA
 A C G T A G T C A C T G A C T G A G T C C G T A A T G C C G T A A C T G A C T G A C T G A G T C G T A C A C G T
G A C T A C G T A C T G A C T G A G T C C G T A G A C T A T C G A T C G C A G T A C T G A G T C A G T C C G T A

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:6
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TCGGCACAGGGCC
CCAGGAACAG----
 A C G T A C G T A G T C A C T G A C T G A G T C C G T A A T G C C G T A A C T G A C T G A C T G A G T C G T A C
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T A C G T

PB0199.1_Zfp161_2/Jaspar

Match Rank:7
Score:0.55
Offset:0
Orientation:forward strand
Alignment:TCGGCACAGGGCC-
GCCGCGCAGTGCGT
 A C G T A G T C A C T G A C T G A G T C C G T A A T G C C G T A A C T G A C T G A C T G A G T C G T A C A C G T
C A T G G A T C A G T C T A C G G A T C C T A G T G A C G T C A C T A G A C G T C T A G G T A C T C A G A G C T

PB0086.1_Tcfap2b_1/Jaspar

Match Rank:8
Score:0.54
Offset:0
Orientation:forward strand
Alignment:TCGGCACAGGGCC-
TTGCCCTAGGGCAT
 A C G T A G T C A C T G A C T G A G T C C G T A A T G C C G T A A C T G A C T G A C T G A G T C G T A C A C G T
C G A T G A C T T A C G A T G C A G T C A G T C A G C T T C G A T C A G C T A G A T C G A T G C C T G A C G A T

MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer

Match Rank:9
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:TCGGCACAGGGCC
--GTCACATGAY-
 A C G T A G T C A C T G A C T G A G T C C G T A A T G C C G T A A C T G A C T G A C T G A G T C G T A C
A C G T A C G T T C A G G A C T G T A C G T C A A G T C T C G A G C A T A T C G T C G A A G T C A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:10
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-TCGGCACAGGGCC
TAGGGCAAAGGTCA
 A C G T A C G T A G T C A C T G A C T G A G T C C G T A A T G C C G T A A C T G A C T G A C T G A G T C G T A C
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A