Information for 4-NAAAATGGCG (Motif 3)

A C G T C G T A G T C A T G C A C G T A A C G T T A C G T C A G G T A C A C T G
Reverse Opposite:
T G A C A C T G A G T C A T G C C G T A A C G T A C G T A C G T G C A T T G C A
p-value:1e-17
log p-value:-4.091e+01
Information Content per bp:1.708
Number of Target Sequences with motif57.0
Percentage of Target Sequences with motif6.15%
Number of Background Sequences with motif708.1
Percentage of Background Sequences with motif1.50%
Average Position of motif in Targets45.0 +/- 24.9bp
Average Position of motif in Background52.9 +/- 32.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.83
Offset:0
Orientation:forward strand
Alignment:NAAAATGGCG--
CAAGATGGCGGC
 A C G T C G T A G T C A T G C A C G T A A C G T T A C G T C A G G T A C A C T G A C G T A C G T
T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C

YY2/MA0748.1/Jaspar

Match Rank:2
Score:0.81
Offset:2
Orientation:reverse strand
Alignment:NAAAATGGCG---
--TAATGGCGGNC
 A C G T C G T A G T C A T G C A C G T A A C G T T A C G T C A G G T A C A C T G A C G T A C G T A C G T
A C G T A C G T G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C

YY1(Zf)/Promoter/Homer

Match Rank:3
Score:0.79
Offset:0
Orientation:forward strand
Alignment:NAAAATGGCG--
CAAGATGGCGGC
 A C G T C G T A G T C A T G C A C G T A A C G T T A C G T C A G G T A C A C T G A C G T A C G T
T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C

E2F2/MA0864.1/Jaspar

Match Rank:4
Score:0.71
Offset:1
Orientation:forward strand
Alignment:NAAAATGGCG-------
-AAAATGGCGCCATTTT
 A C G T C G T A G T C A T G C A C G T A A C G T T A C G T C A G G T A C A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C G T A C G T A C G T A C G T A C G A T A T C G A C T G A G T C A C T G A G T C A T G C G C T A G C A T C G A T C G A T G C A T

E2F3/MA0469.2/Jaspar

Match Rank:5
Score:0.70
Offset:0
Orientation:forward strand
Alignment:NAAAATGGCG--------
AAAAATGGCGCCATTTTT
 A C G T C G T A G T C A T G C A C G T A A C G T T A C G T C A G G T A C A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T G A T C G A C G T A C G T A C G T A C A G T A T C G A T C G A G T C A T C G A G T C T A G C G T C A G C A T C G A T G C A T A G C T A G C T

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---NAAAATGGCG
DCYAAAAATAGM-
 A C G T A C G T A C G T A C G T C G T A G T C A T G C A C G T A A C G T T A C G T C A G G T A C A C T G
C A T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G A C T C T G A T C A G G T A C A C G T

Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer

Match Rank:7
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---NAAAATGGCG
GCTAAAAATAGC-
 A C G T A C G T A C G T A C G T C G T A G T C A T G C A C G T A A C G T T A C G T C A G G T A C A C T G
A C T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G C A T C T G A T C A G G T A C A C G T

Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer

Match Rank:8
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---NAAAATGGCG
KCCAAAAATAGC-
 A C G T A C G T A C G T A C G T C G T A G T C A T G C A C G T A A C G T T A C G T C A G G T A C A C T G
A C T G G T A C G A T C G C T A C G T A C T G A C G T A C G T A G C A T C T G A T C A G G T A C A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:9
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--NAAAATGGCG
VRAACAATGG--
 A C G T A C G T A C G T C G T A G T C A T G C A C G T A A C G T T A C G T C A G G T A C A C T G
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:10
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-NAAAATGGCG
RAACAATGGN-
 A C G T A C G T C G T A G T C A T G C A C G T A A C G T T A C G T C A G G T A C A C T G
C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C A C G T