Information for 4-TGCCAACCAG (Motif 12)

A C G T A C T G A T G C G T A C C G T A T G C A T G A C A G T C C G T A A T C G
Reverse Opposite:
A T G C C G A T A C T G A C T G A C G T A C G T A C T G A T C G G T A C C G T A
p-value:1e-9
log p-value:-2.217e+01
Information Content per bp:1.854
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif2.83%
Number of Background Sequences with motif161.2
Percentage of Background Sequences with motif0.34%
Average Position of motif in Targets43.2 +/- 24.9bp
Average Position of motif in Background44.6 +/- 30.4bp
Strand Bias (log2 ratio + to - strand density)-1.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0029.1_Hic1_1/Jaspar

Match Rank:1
Score:0.84
Offset:-4
Orientation:forward strand
Alignment:----TGCCAACCAG--
ACTATGCCAACCTACC
 A C G T A C G T A C G T A C G T A C G T A C T G A T G C G T A C C G T A T G C A T G A C A G T C C G T A A T C G A C G T A C G T
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

Hic1/MA0739.1/Jaspar

Match Rank:2
Score:0.82
Offset:-1
Orientation:forward strand
Alignment:-TGCCAACCAG
ATGCCAACC--
 A C G T A C G T A C T G A T G C G T A C C G T A T G C A T G A C A G T C C G T A A T C G
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--TGCCAACCAG
GGTGCCAAGT--
 A C G T A C G T A C G T A C T G A T G C G T A C C G T A T G C A T G A C A G T C C G T A A T C G
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--TGCCAACCAG
CGTGCCAAG---
 A C G T A C G T A C G T A C T G A T G C G T A C C G T A T G C A T G A C A G T C C G T A A T C G
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-TGCCAACCAG
TTGCCAAG---
 A C G T A C G T A C T G A T G C G T A C C G T A T G C A T G A C A G T C C G T A A T C G
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:6
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:TGCCAACCAG
TGCCAA----
 A C G T A C T G A T G C G T A C C G T A T G C A T G A C A G T C C G T A A T C G
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:7
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--TGCCAACCAG
SCTGTCAVTCAV
 A C G T A C G T A C G T A C T G A T G C G T A C C G T A T G C A T G A C A G T C C G T A A T C G
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

HIC2/MA0738.1/Jaspar

Match Rank:8
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-TGCCAACCAG
ATGCCCACC--
 A C G T A C G T A C T G A T G C G T A C C G T A T G C A T G A C A G T C C G T A A T C G
T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--TGCCAACCAG
NCTGTCAATCAN
 A C G T A C G T A C G T A C T G A T G C G T A C C G T A T G C A T G A C A G T C C G T A A T C G
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

NFYB/MA0502.1/Jaspar

Match Rank:10
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----TGCCAACCAG
AAATGGACCAATCAG
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T G C G T A C C G T A T G C A T G A C A G T C C G T A A T C G
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G