Information for 2-CSSKTTWATTCCC (Motif 5)

A G T C A T G C A T G C A C T G A C G T A C G T C G T A C G T A A C G T A C G T A G T C A G T C A G T C
Reverse Opposite:
A C T G A C T G A C T G C G T A C G T A A C G T C G A T G T C A C G T A T G A C A T C G A T C G C T A G
p-value:1e-13
log p-value:-3.158e+01
Information Content per bp:1.871
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets63.5 +/- 22.7bp
Average Position of motif in Background47.3 +/- 1.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA10/MA0899.1/Jaspar

Match Rank:1
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:CSSKTTWATTCCC
--NTTTTATTACN
 A G T C A T G C A T G C A C T G A C G T A C G T C G T A C G T A A C G T A C G T A G T C A G T C A G T C
A C G T A C G T C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C

PH0013.1_Cdx2/Jaspar

Match Rank:2
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CSSKTTWATTCCC---
NAATTTTATTACCNNN
 A G T C A T G C A T G C A C T G A C G T A C G T C G T A C G T A A C G T A C G T A G T C A G T C A G T C A C G T A C G T A C G T
C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T

Hoxd9/MA0913.1/Jaspar

Match Rank:3
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CSSKTTWATTCCC
--TTTTTATTGC-
 A G T C A T G C A T G C A C T G A C G T A C G T C G T A C G T A A C G T A C G T A G T C A G T C A G T C
A C G T A C G T C G A T G C A T C A G T C G A T C G A T C G T A G A C T A C G T C T A G A G T C A C G T

PH0121.1_Obox1/Jaspar

Match Rank:4
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CSSKTTWATTCCC----
NTAGTTAATCCCCTTAN
 A G T C A T G C A T G C A C T G A C G T A C G T C G T A C G T A A C G T A C G T A G T C A G T C A G T C A C G T A C G T A C G T A C G T
C T A G C G A T G C T A A C T G G C A T C G A T C G T A C T G A A C G T G T A C A G T C G A T C G A T C A G C T A G C T G C T A G C T A

PH0012.1_Cdx1/Jaspar

Match Rank:5
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CSSKTTWATTCCC---
NAATTTTATTACCTNN
 A G T C A T G C A T G C A C T G A C G T A C G T C G T A C G T A A C G T A C G T A G T C A G T C A G T C A C G T A C G T A C G T
C G A T G T C A T C G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T G A C T G C T A

PH0015.1_Crx/Jaspar

Match Rank:6
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CSSKTTWATTCCC----
-AGGCTAATCCCCAANG
 A G T C A T G C A T G C A C T G A C G T A C G T C G T A C G T A A C G T A C G T A G T C A G T C A G T C A C G T A C G T A C G T A C G T
A C G T G T C A T A C G T C A G G A T C C G A T C G T A C G T A A C G T A G T C A G T C A T G C A T G C G C T A G C T A T G A C T C A G

PH0023.1_Dlx4/Jaspar

Match Rank:7
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CSSKTTWATTCCC---
GCGCTATAATTACCGAC
 A C G T A G T C A T G C A T G C A C T G A C G T A C G T C G T A C G T A A C G T A C G T A G T C A G T C A G T C A C G T A C G T A C G T
A C G T G T A C T C A G T G A C C A G T C T G A G A C T C G T A C G T A C G A T A C G T C T G A G T A C G T A C T A C G G C T A G T A C

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:8
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:CSSKTTWATTCCC
---TTTAATTGCN
 A G T C A T G C A T G C A C T G A C G T A C G T C G T A C G T A A C G T A C G T A G T C A G T C A G T C
A C G T A C G T A C G T C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C

MNX1/MA0707.1/Jaspar

Match Rank:9
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:CSSKTTWATTCCC
---TTTAATTANN
 A G T C A T G C A T G C A C T G A C G T A C G T C G T A C G T A A C G T A C G T A G T C A G T C A G T C
A C G T A C G T A C G T C A G T G C A T A C G T G C T A C T G A A C G T C A G T T C G A A T G C G A T C

CDX1/MA0878.1/Jaspar

Match Rank:10
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:CSSKTTWATTCCC
---TTTTATTGC-
 A G T C A T G C A T G C A C T G A C G T A C G T C G T A C G T A A C G T A C G T A G T C A G T C A G T C
A C G T A C G T A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T