Information for 9-SAGAATTGGC (Motif 39)

A T G C C G T A A C T G G C T A C T G A A C G T G A C T A C T G C T A G A G T C
Reverse Opposite:
A C T G A G T C A G T C C T G A G T C A A G C T C G A T A G T C A C G T A T C G
p-value:1e-7
log p-value:-1.614e+01
Information Content per bp:1.818
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.96%
Number of Background Sequences with motif166.8
Percentage of Background Sequences with motif0.34%
Average Position of motif in Targets57.6 +/- 31.4bp
Average Position of motif in Background49.9 +/- 29.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.1/Jaspar

Match Rank:1
Score:0.69
Offset:5
Orientation:forward strand
Alignment:SAGAATTGGC-
-----TTGGCA
 A T G C C G T A A C T G G C T A C T G A A C G T G A C T A C T G C T A G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.68
Offset:4
Orientation:reverse strand
Alignment:SAGAATTGGC---
----NTTGGCANN
 A T G C C G T A A C T G G C T A C T G A A C G T G A C T A C T G C T A G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:SAGAATTGGC---
---NNTTGGCANN
 A T G C C G T A A C T G G C T A C T G A A C G T G A C T A C T G C T A G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.59
Offset:1
Orientation:forward strand
Alignment:SAGAATTGGC------
-AGAAATGACTTCCCT
 A T G C C G T A A C T G G C T A C T G A A C G T G A C T A C T G C T A G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C T G A C T A G T G C A C T G A T C G A A G C T C A T G T C G A A G T C G A C T A C G T A G T C G A T C G A T C G A C T

NFY(CCAAT)/Promoter/Homer

Match Rank:5
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:SAGAATTGGC-
-CCGATTGGCT
 A T G C C G T A A C T G G C T A C T G A A C G T G A C T A C T G C T A G A G T C A C G T
A C G T A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T

POL004.1_CCAAT-box/Jaspar

Match Rank:6
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:SAGAATTGGC----
--TGATTGGCTANN
 A T G C C G T A A C T G G C T A C T G A A C G T G A C T A C T G C T A G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

Hic1/MA0739.1/Jaspar

Match Rank:7
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:SAGAATTGGC--
---GGTTGGCAT
 A T G C C G T A A C T G G C T A C T G A A C G T G A C T A C T G C T A G A G T C A C G T A C G T
A C G T A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

PB0139.1_Irf5_2/Jaspar

Match Rank:8
Score:0.56
Offset:-6
Orientation:forward strand
Alignment:------SAGAATTGGC
TTGACCGAGAATTCC-
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C C G T A A C T G G C T A C T G A A C G T G A C T A C T G C T A G A G T C
A G C T G C A T C T A G C G T A G A C T G T A C C T A G C T G A A T C G C G T A C T G A G A C T G A C T A G T C T A G C A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:SAGAATTGGC--
----CTTGGCAA
 A T G C C G T A A C T G G C T A C T G A A C G T G A C T A C T G C T A G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

PB0137.1_Irf3_2/Jaspar

Match Rank:10
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-SAGAATTGGC---
GGAGAAAGGTGCGA
 A C G T A T G C C G T A A C T G G C T A C T G A A C G T G A C T A C T G C T A G A G T C A C G T A C G T A C G T
C T A G C A T G C G T A C T A G C G T A G C T A C G T A A T C G T A C G C G A T A T C G A G T C C T A G C T G A