Information for 18-GGCATKRACTTGA (Motif 35)

A C T G C T A G G T A C C G T A A C G T A C G T C T A G C G T A A T G C A C G T A C G T A C T G C G T A
Reverse Opposite:
A C G T G T A C T G C A C G T A A T C G A C G T G A T C T G C A C G T A A C G T A C T G A G T C A G T C
p-value:1e-8
log p-value:-1.982e+01
Information Content per bp:1.778
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.18%
Number of Background Sequences with motif31.3
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets43.4 +/- 28.1bp
Average Position of motif in Background44.7 +/- 24.3bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0124.1_Obox5_1/Jaspar

Match Rank:1
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GGCATKRACTTGA
TAGAGGGATTAAATTTC
 A C G T A C G T A C G T A C G T A C T G C T A G G T A C C G T A A C G T A C G T C T A G C G T A A T G C A C G T A C G T A C T G C G T A
G C A T C T G A T C A G T C G A T C A G C T A G C A T G C G T A A C G T C G A T C G T A C G T A G C T A G A C T A G C T G C A T G T A C

PH0073.1_Hoxc9/Jaspar

Match Rank:2
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----GGCATKRACTTGA
GGAGGTCATTAATTAT-
 A C G T A C G T A C G T A C G T A C T G C T A G G T A C C G T A A C G T A C G T C T A G C G T A A T G C A C G T A C G T A C T G C G T A
T C A G C A T G T C G A C T A G T C A G G A C T G T A C C T G A G C A T G C A T C G T A G C T A G A C T G A C T C G T A A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:3
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----GGCATKRACTTGA
NGTGGGCAT--------
 A C G T A C G T A C G T A C G T A C T G C T A G G T A C C G T A A C G T A C G T C T A G C G T A A T G C A C G T A C G T A C T G C G T A
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:4
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----GGCATKRACTTGA
GGTTGGCAT--------
 A C G T A C G T A C G T A C G T A C T G C T A G G T A C C G T A A C G T A C G T C T A G C G T A A T G C A C G T A C G T A C T G C G T A
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0121.1_Obox1/Jaspar

Match Rank:5
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----GGCATKRACTTGA
TTAAGGGGATTAACTAC-
 A C G T A C G T A C G T A C G T A C G T A C T G C T A G G T A C C G T A A C G T A C G T C T A G C G T A A T G C A C G T A C G T A C T G C G T A
C A G T C G A T T C G A T C G A C T A G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C G T A G T A C C G A T G C T A A G T C A C G T

PH0123.1_Obox3/Jaspar

Match Rank:6
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----GGCATKRACTTGA
TGAGGGGGATTAACTAT-
 A C G T A C G T A C G T A C G T A C G T A C T G C T A G G T A C C G T A A C G T A C G T C T A G C G T A A T G C A C G T A C G T A C T G C G T A
G C A T A T C G T C G A T A C G C T A G C T A G C T A G C A T G G C T A A C G T G A C T C G T A C G T A G T A C C G A T G T C A G A C T A C G T

Esrra/MA0592.2/Jaspar

Match Rank:7
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:GGCATKRACTTGA-
---ATGACCTTGAA
 A C T G C T A G G T A C C G T A A C G T A C G T C T A G C G T A A T G C A C G T A C G T A C T G C G T A A C G T
A C G T A C G T A C G T C G T A A G C T T A C G T G C A T G A C T G A C A G C T A G C T A T C G C T G A T G C A

PH0125.1_Obox5_2/Jaspar

Match Rank:8
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----GGCATKRACTTGA
NANAGGGATTAATTATN
 A C G T A C G T A C G T A C G T A C T G C T A G G T A C C G T A A C G T A C G T C T A G C G T A A T G C A C G T A C G T A C T G C G T A
T C G A C T G A T C A G T C G A T C A G T C A G A C T G G C T A A C G T C G A T C G T A C G T A G C A T G A C T T C G A G C A T T G A C

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GGCATKRACTTGA
GGCCATTAAC----
 A C G T A C T G C T A G G T A C C G T A A C G T A C G T C T A G C G T A A T G C A C G T A C G T A C T G C G T A
C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T A C G T A C G T A C G T

TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer

Match Rank:10
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---GGCATKRACTTGA
CCWGGAATGY------
 A C G T A C G T A C G T A C T G C T A G G T A C C G T A A C G T A C G T C T A G C G T A A T G C A C G T A C G T A C T G C G T A
T A G C T A G C G C A T C A T G A C T G G C T A C G T A A C G T A C T G G A T C A C G T A C G T A C G T A C G T A C G T A C G T