Information for 13-GCGVTTCATAGTC (Motif 28)

A C T G A T G C A C T G T A C G A C G T A C G T A G T C C T G A A C G T C G T A C T A G A C G T A G T C
Reverse Opposite:
A C T G C G T A A G T C A C G T C G T A A G C T A C T G G T C A C G T A A C G T A G T C A T C G A G T C
p-value:1e-9
log p-value:-2.216e+01
Information Content per bp:1.850
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.65%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets57.2 +/- 13.2bp
Average Position of motif in Background50.8 +/- 10.8bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.58
Offset:3
Orientation:forward strand
Alignment:GCGVTTCATAGTC
---ATGAATATTC
 A C T G A T G C A C T G T A C G A C G T A C G T A G T C C T G A A C G T C G T A C T A G A C G T A G T C
A C G T A C G T A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:2
Score:0.58
Offset:3
Orientation:forward strand
Alignment:GCGVTTCATAGTC
---ATGMATATDC
 A C T G A T G C A C T G T A C G A C G T A C G T A G T C C T G A A C G T C G T A C T A G A C G T A G T C
A C G T A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

PB0185.1_Tcf1_2/Jaspar

Match Rank:3
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:GCGVTTCATAGTC-------
------NNTAATCCNGNCNN
 A C T G A T G C A C T G T A C G A C G T A C G T A G T C C T G A A C G T C G T A C T A G A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A T C G T A C G C A T T G C A G T C A G A C T G T A C A G T C T C A G A T C G C T A G A G T C T G C A C G T A

OTX1/MA0711.1/Jaspar

Match Rank:4
Score:0.54
Offset:7
Orientation:forward strand
Alignment:GCGVTTCATAGTC--
-------TTAATCCG
 A C T G A T G C A C T G T A C G A C G T A C G T A G T C C T G A A C G T C G T A C T A G A C G T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T G C A T C G T A C G T A C A G T T A G C A T G C A T C G

Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer

Match Rank:5
Score:0.54
Offset:-7
Orientation:reverse strand
Alignment:-------GCGVTTCATAGTC
GCMTBCTGGGAGTTGTAGTY
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T G C A C T G T A C G A C G T A C G T A G T C C T G A A C G T C G T A C T A G A C G T A G T C
C A T G T A G C G T A C A G C T A C G T T G A C A G C T C T A G A C T G C T A G C G T A T C A G G C A T A G C T A C T G C G A T C T G A A C T G A C G T A G T C

GSC2/MA0891.1/Jaspar

Match Rank:6
Score:0.53
Offset:6
Orientation:forward strand
Alignment:GCGVTTCATAGTC---
------CCTAATCCGC
 A C T G A T G C A C T G T A C G A C G T A C G T A G T C C T G A A C G T C G T A C T A G A C G T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G A C G A T C C G A T G C T A G C T A A C G T G T A C A G T C A T C G G A T C

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:7
Score:0.53
Offset:7
Orientation:reverse strand
Alignment:GCGVTTCATAGTC--
-------YTAATCCY
 A C T G A T G C A C T G T A C G A C G T A C G T A G T C C T G A A C G T C G T A C T A G A C G T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C

PH0130.1_Otx2/Jaspar

Match Rank:8
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----GCGVTTCATAGTC
TGTAGGGATTAATTGTC
 A C G T A C G T A C G T A C G T A C T G A T G C A C T G T A C G A C G T A C G T A G T C C T G A A C G T C G T A C T A G A C G T A G T C
C A G T C T A G C G A T T C G A T C A G T C A G C A T G G T C A C G A T C G A T C G T A C T G A A G C T G A C T C T A G C A G T G A T C

OTX2/MA0712.1/Jaspar

Match Rank:9
Score:0.53
Offset:7
Orientation:forward strand
Alignment:GCGVTTCATAGTC--
-------TTAATCCT
 A C T G A T G C A C T G T A C G A C G T A C G T A G T C C T G A A C G T C G T A C T A G A C G T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T G C A T C G T A C G T A C A G T G A T C A G T C A C G T

Hnf4a/MA0114.3/Jaspar

Match Rank:10
Score:0.53
Offset:1
Orientation:forward strand
Alignment:GCGVTTCATAGTC----
-GGGGTCAAAGTCCAAT
 A C T G A T G C A C T G T A C G A C G T A C G T A G T C C T G A A C G T C G T A C T A G A C G T A G T C A C G T A C G T A C G T A C G T
A C G T T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T