Information for 3-AGACAAAACACCATCC (Motif 10)

C G T A C T A G C G T A T A G C C G T A C G T A G T C A C G T A A G T C C G T A A G T C A G T C C G T A A C G T A G T C A G T C
Reverse Opposite:
C T A G C T A G C G T A A C G T A C T G A C T G A C G T A C T G A C G T A C G T A C G T A C G T A T C G C G A T A G T C C G A T
p-value:1e-10
log p-value:-2.329e+01
Information Content per bp:1.898
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets31.6 +/- 17.3bp
Average Position of motif in Background54.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0123.1_Foxl1_2/Jaspar

Match Rank:1
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AGACAAAACACCATCC
ATATCAAAACAAAACA-
 A C G T C G T A C T A G C G T A T A G C C G T A C G T A G T C A C G T A A G T C C G T A A G T C A G T C C G T A A C G T A G T C A G T C
G C T A C G A T C G T A C G A T G A T C G C T A G C T A G T C A C G T A A G T C C G T A C G T A G T C A C G T A G T A C G T C A A C G T

RREB1/MA0073.1/Jaspar

Match Rank:2
Score:0.54
Offset:0
Orientation:forward strand
Alignment:AGACAAAACACCATCC----
CCCCAAACCACCCCCCCCCA
 C G T A C T A G C G T A T A G C C G T A C G T A G T C A C G T A A G T C C G T A A G T C A G T C C G T A A C G T A G T C A G T C A C G T A C G T A C G T A C G T
G T A C G T A C G T A C A G T C G T C A G T C A G T C A G T A C A G T C C G T A G T A C G T A C G T A C T G A C G T A C G T A C G T A C G T A C T A G C T G A C

PH0164.1_Six4/Jaspar

Match Rank:3
Score:0.52
Offset:0
Orientation:forward strand
Alignment:AGACAAAACACCATCC-
ATAAATGACACCTATCA
 C G T A C T A G C G T A T A G C C G T A C G T A G T C A C G T A A G T C C G T A A G T C A G T C C G T A A C G T A G T C A G T C A C G T
G C T A C A G T C T G A G T C A G C T A A G C T C A T G G T C A A G T C G T C A G T A C A G T C A G C T G T C A A G C T A G T C T C G A

POL007.1_BREd/Jaspar

Match Rank:4
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:AGACAAAACACCATCC
----NANANAC-----
 C G T A C T A G C G T A T A G C C G T A C G T A G T C A C G T A A G T C C G T A A G T C A G T C C G T A A C G T A G T C A G T C
A C G T A C G T A C G T A C G T T G C A T G C A T G A C T G C A G T C A T C G A G A T C A C G T A C G T A C G T A C G T A C G T

PB0122.1_Foxk1_2/Jaspar

Match Rank:5
Score:0.52
Offset:1
Orientation:forward strand
Alignment:AGACAAAACACCATCC
-CAAACAACAACACCT
 C G T A C T A G C G T A T A G C C G T A C G T A G T C A C G T A A G T C C G T A A G T C A G T C C G T A A C G T A G T C A G T C
A C G T G T A C G C T A G T C A C T G A G A T C T G C A T C G A A G T C T C G A C G T A G A T C C G T A G A T C G T A C G A C T

PB0121.1_Foxj3_2/Jaspar

Match Rank:6
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--AGACAAAACACCATCC
AACACCAAAACAAAGGA-
 A C G T A C G T C G T A C T A G C G T A T A G C C G T A C G T A G T C A C G T A A G T C C G T A A G T C A G T C C G T A A C G T A G T C A G T C
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A A C G T

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.51
Offset:4
Orientation:forward strand
Alignment:AGACAAAACACCATCC
----ATCACCCCAT--
 C G T A C T A G C G T A T A G C C G T A C G T A G T C A C G T A A G T C C G T A A G T C A G T C C G T A A C G T A G T C A G T C
A C G T A C G T A C G T A C G T T C G A G C A T A T G C C T G A A T G C T A G C A G T C G T A C T C G A A G C T A C G T A C G T

PB0120.1_Foxj1_2/Jaspar

Match Rank:8
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-AGACAAAACACCATCC
ATGTCACAACAACAC--
 A C G T C G T A C T A G C G T A T A G C C G T A C G T A G T C A C G T A A G T C C G T A A G T C A G T C C G T A A C G T A G T C A G T C
C G T A A G C T T C A G A C G T T A G C T C G A A G T C C T G A G T C A T G A C C G T A C T G A A T G C T C G A G T A C A C G T A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:9
Score:0.50
Offset:-4
Orientation:forward strand
Alignment:----AGACAAAACACCATCC
AAACAGACAAAGGAAT----
 A C G T A C G T A C G T A C G T C G T A C T A G C G T A T A G C C G T A C G T A G T C A C G T A A G T C C G T A A G T C A G T C C G T A A C G T A G T C A G T C
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T A C G T A C G T A C G T A C G T

Foxd3/MA0041.1/Jaspar

Match Rank:10
Score:0.50
Offset:4
Orientation:reverse strand
Alignment:AGACAAAACACCATCC
----AAACAAACATTC
 C G T A C T A G C G T A T A G C C G T A C G T A G T C A C G T A A G T C C G T A A G T C A G T C C G T A A C G T A G T C A G T C
A C G T A C G T A C G T A C G T C T G A T G C A C T G A G A T C G T C A C G T A C G T A G A T C C T G A C G A T C G A T G A T C