| p-value: | 1e-9 |
| log p-value: | -2.275e+01 |
| Information Content per bp: | 1.847 |
| Number of Target Sequences with motif | 16.0 |
| Percentage of Target Sequences with motif | 2.99% |
| Number of Background Sequences with motif | 172.7 |
| Percentage of Background Sequences with motif | 0.35% |
| Average Position of motif in Targets | 57.2 +/- 20.8bp |
| Average Position of motif in Background | 53.1 +/- 29.0bp |
| Strand Bias (log2 ratio + to - strand density) | 0.7 |
| Multiplicity (# of sites on avg that occur together) | 1.00 |
| Motif File: | file (matrix)
reverse opposite |
| SVG Files for Logos: | forward logo
reverse opposite |
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer
| Match Rank: | 1 |
| Score: | 0.67
| | Offset: | 0
| | Orientation: | reverse strand |
| Alignment: | TGACCCTCTT
TGACCTARTT |
|
|
|
RORA/MA0071.1/Jaspar
| Match Rank: | 2 |
| Score: | 0.65
| | Offset: | 0
| | Orientation: | reverse strand |
| Alignment: | TGACCCTCTT
TGACCTTGAT |
|
|
|
MF0004.1_Nuclear_Receptor_class/Jaspar
| Match Rank: | 3 |
| Score: | 0.65
| | Offset: | 0
| | Orientation: | reverse strand |
| Alignment: | TGACCCTCTT
TGACCT---- |
|
|
|
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer
| Match Rank: | 4 |
| Score: | 0.65
| | Offset: | 0
| | Orientation: | reverse strand |
| Alignment: | TGACCCTCTT
TGACCYCT-- |
|
|
|
RORA(var.2)/MA0072.1/Jaspar
| Match Rank: | 5 |
| Score: | 0.64
| | Offset: | -1
| | Orientation: | reverse strand |
| Alignment: | -TGACCCTCTT---
TTGACCTANTTATN |
|
|
|
Crx/MA0467.1/Jaspar
| Match Rank: | 6 |
| Score: | 0.63
| | Offset: | -1
| | Orientation: | reverse strand |
| Alignment: | -TGACCCTCTT
CTAATCCTCTT |
|
|
|
PB0153.1_Nr2f2_2/Jaspar
| Match Rank: | 7 |
| Score: | 0.62
| | Offset: | -4
| | Orientation: | reverse strand |
| Alignment: | ----TGACCCTCTT--
NNNNTGACCCGGCGCG |
|
|
|
PB0057.1_Rxra_1/Jaspar
| Match Rank: | 8 |
| Score: | 0.61
| | Offset: | -5
| | Orientation: | forward strand |
| Alignment: | -----TGACCCTCTT--
TGTCGTGACCCCTTAAT |
|
|
|
PH0115.1_Nkx2-6/Jaspar
| Match Rank: | 9 |
| Score: | 0.61
| | Offset: | 0
| | Orientation: | forward strand |
| Alignment: | TGACCCTCTT------
TAAGCCACTTAACATT |
|
|
|
PH0171.1_Nkx2-1/Jaspar
| Match Rank: | 10 |
| Score: | 0.60
| | Offset: | 0
| | Orientation: | forward strand |
| Alignment: | TGACCCTCTT------
TAAGCCACTTGAAATT |
|
|
|
