Information for 4-GAGGGCAAAAAGAGGT (Motif 12)

A C T G C T G A C T A G A C T G C T A G A T G C C G T A C G T A G T C A C G T A C G T A A T C G C G T A A C T G A C T G A C G T
Reverse Opposite:
C G T A A G T C A G T C A C G T A T G C A C G T A C G T A C G T A C G T C G A T A T C G A G T C A G T C A G T C A G C T A G T C
p-value:1e-8
log p-value:-2.067e+01
Information Content per bp:1.916
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.64%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets62.5 +/- 21.8bp
Average Position of motif in Background78.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GAGGGCAAAAAGAGGT
ARGAGGMCAAAATGW---
 A C G T A C G T A C T G C T G A C T A G A C T G C T A G A T G C C G T A C G T A G T C A C G T A C G T A A T C G C G T A A C T G A C T G A C G T
T G C A C T A G C T A G C T G A C A T G A C T G T G C A G A T C G T C A T G C A G T C A G T C A A G C T C T A G G C A T A C G T A C G T A C G T

Rarb(var.2)/MA0858.1/Jaspar

Match Rank:2
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GAGGGCAAAAAGAGGT--
-AGGTCAACTAAAGGTCA
 A C T G C T G A C T A G A C T G C T A G A T G C C G T A C G T A G T C A C G T A C G T A A T C G C G T A A C T G A C T G A C G T A C G T A C G T
A C G T T C G A A T C G C A T G A G C T A T G C C T G A G T C A T G A C A G C T C G T A C T G A C T G A T A C G A C T G A C G T A G T C C T G A

RARA(var.2)/MA0730.1/Jaspar

Match Rank:3
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GAGGGCAAAAAGAGGT--
-AGGTCATGCAAAGGTCA
 A C T G C T G A C T A G A C T G C T A G A T G C C G T A C G T A G T C A C G T A C G T A A T C G C G T A A C T G A C T G A C G T A C G T A C G T
A C G T T C G A A C T G A C T G A C G T G A T C T G C A G A C T A T C G A G T C C G T A T C G A T C G A C A T G A C T G A C G T A T G C C T G A

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:4
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GAGGGCAAAAAGAGGT---
-RGGTCADNNAGAGGTCAV
 A C T G C T G A C T A G A C T G C T A G A T G C C G T A C G T A G T C A C G T A C G T A A T C G C G T A A C T G A C T G A C G T A C G T A C G T A C G T
A C G T C T G A C A T G A C T G A C G T A T G C C G T A C A T G T A C G A T G C G C T A T A C G C T G A C T A G A C T G A C G T A T G C C G T A T A G C

RARA::RXRA/MA0159.1/Jaspar

Match Rank:5
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GAGGGCAAAAAGAGGT--
-AGGTCACGGAGAGGTCA
 A C T G C T G A C T A G A C T G C T A G A T G C C G T A C G T A G T C A C G T A C G T A A T C G C G T A A C T G A C T G A C G T A C G T A C G T
A C G T C T G A A C T G C A T G A C G T A T G C C T G A A G C T T A C G T C A G C T G A T A C G T C G A A C T G A C T G C A G T A T G C C G T A

MEF2C/MA0497.1/Jaspar

Match Rank:6
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GAGGGCAAAAAGAGGT
-ATGCTAAAAATAGAA
 A C T G C T G A C T A G A C T G C T A G A T G C C G T A C G T A G T C A C G T A C G T A A T C G C G T A A C T G A C T G A C G T
A C G T C T G A C G A T C A T G G T A C A G C T G C T A C T G A C T G A C G T A C G T A G A C T C T G A T C A G G T C A G C T A

SPI1/MA0080.4/Jaspar

Match Rank:7
Score:0.53
Offset:6
Orientation:forward strand
Alignment:GAGGGCAAAAAGAGGT----
------AAAAAGCGGAAGTA
 A C T G C T G A C T A G A C T G C T A G A T G C C G T A C G T A G T C A C G T A C G T A A T C G C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A C T G A C G T A C G T A C G T A T A C G T G A C C T A G A T C G G T C A C G T A A T C G G A C T C G T A

Rarg(var.2)/MA0860.1/Jaspar

Match Rank:8
Score:0.52
Offset:1
Orientation:forward strand
Alignment:GAGGGCAAAAAGAGGT--
-AAGGTCACGAAAGGTCA
 A C T G C T G A C T A G A C T G C T A G A T G C C G T A C G T A G T C A C G T A C G T A A T C G C G T A A C T G A C T G A C G T A C G T A C G T
A C G T C T G A T C G A A T C G A C T G A C G T G T A C T C G A G T A C A T C G T C G A T C G A T C G A A C T G A C T G G C A T G A T C T C G A

Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer

Match Rank:9
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:GAGGGCAAAAAGAGGT
---GCTAAAAATAGC-
 A C T G C T G A C T A G A C T G C T A G A T G C C G T A C G T A G T C A C G T A C G T A A T C G C G T A A C T G A C T G A C G T
A C G T A C G T A C G T A C T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G C A T C T G A T C A G G T A C A C G T

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.51
Offset:3
Orientation:forward strand
Alignment:GAGGGCAAAAAGAGGT
---DCYAAAAATAGM-
 A C T G C T G A C T A G A C T G C T A G A T G C C G T A C G T A G T C A C G T A C G T A A T C G C G T A A C T G A C T G A C G T
A C G T A C G T A C G T C A T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G A C T C T G A T C A G G T A C A C G T