Information for 1-GGGGCTTAGTGAG (Motif 1)

A C T G C T A G A C T G C T A G A G T C C G A T A C G T C G T A A C T G A C G T A C T G C G T A A C T G
Reverse Opposite:
G T A C A C G T A G T C C G T A A G T C C G A T C G T A C G T A A C T G A G T C A G T C G A T C A G T C
p-value:1e-14
log p-value:-3.282e+01
Information Content per bp:1.932
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.96%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets65.8 +/- 15.2bp
Average Position of motif in Background55.4 +/- 22.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Crx/MA0467.1/Jaspar

Match Rank:1
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GGGGCTTAGTGAG
AAGAGGATTAG----
 A C G T A C G T A C T G C T A G A C T G C T A G A G T C C G A T A C G T C G T A A C T G A C G T A C T G C G T A A C T G
T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G A C G T A C G T A C G T A C G T

PH0139.1_Pitx3/Jaspar

Match Rank:2
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GGGGCTTAGTGAG-
AGGGGGATTAGCTGCC
 A C G T A C G T A C T G C T A G A C T G C T A G A G T C C G A T A C G T C G T A A C T G A C G T A C T G C G T A A C T G A C G T
T C G A C T A G T A C G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C A T G A T G C A C G T C T A G A T G C A T G C

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:3
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GGGGCTTAGTGAG
NGGGATTA-----
 A C T G C T A G A C T G C T A G A G T C C G A T A C G T C G T A A C T G A C G T A C T G C G T A A C T G
T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A A C G T A C G T A C G T A C G T A C G T

LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer

Match Rank:4
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---GGGGCTTAGTGAG
NRRGGGTCTT------
 A C G T A C G T A C G T A C T G C T A G A C T G C T A G A G T C C G A T A C G T C G T A A C T G A C G T A C T G C G T A A C T G
A C T G T C G A C T A G A C T G A C T G A C T G A C G T A G T C A C G T A G C T A C G T A C G T A C G T A C G T A C G T A C G T

PITX3/MA0714.1/Jaspar

Match Rank:5
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GGGGCTTAGTGAG
-GGGATTANN---
 A C T G C T A G A C T G C T A G A G T C C G A T A C G T C G T A A C T G A C G T A C T G C G T A A C T G
A C G T C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G A C G T A C G T A C G T

PH0035.1_Gsc/Jaspar

Match Rank:6
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---GGGGCTTAGTGAG-
NNAAGGGATTAACGANT
 A C G T A C G T A C G T A C T G C T A G A C T G C T A G A G T C C G A T A C G T C G T A A C T G A C G T A C T G C G T A A C T G A C G T
A C G T C G T A G T C A C T G A T A C G C T A G C T A G G T C A A C G T A G C T C G T A C T G A A G T C C A T G C G T A A G C T C G A T

MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer

Match Rank:7
Score:0.57
Offset:3
Orientation:forward strand
Alignment:GGGGCTTAGTGAG--
---GCTGASTCAGCA
 A C T G C T A G A C T G C T A G A G T C C G A T A C G T C G T A A C T G A C G T A C T G C G T A A C T G A C G T A C G T
A C G T A C G T A C G T T C A G T A G C G A C T C A T G C T G A A T C G G C A T G T A C C G T A A C T G T A G C T G C A

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:8
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GGGGCTTAGTGAG
--GGATTAGC---
 A C T G C T A G A C T G C T A G A G T C C G A T A C G T C G T A A C T G A C G T A C T G C G T A A C T G
A C G T A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C A C G T A C G T A C G T

PH0015.1_Crx/Jaspar

Match Rank:9
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----GGGGCTTAGTGAG
CGTTGGGGATTAGCCT-
 A C G T A C G T A C G T A C G T A C T G C T A G A C T G C T A G A G T C C G A T A C G T C G T A A C T G A C G T A C T G C G T A A C T G
A G T C A C T G C G A T C G A T T A C G T A C G C T A G A C T G G T C A A C G T C G A T C G T A C T A G A G T C A T G C C A G T A C G T

PH0138.1_Pitx2/Jaspar

Match Rank:10
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---GGGGCTTAGTGAG-
TGAAGGGATTAATCATC
 A C G T A C G T A C G T A C T G C T A G A C T G C T A G A G T C C G A T A C G T C G T A A C T G A C G T A C T G C G T A A C T G A C G T
C A G T C A T G C G T A T C G A T C A G C T A G C A T G G T C A A G C T G A C T C G T A C T G A A G C T G A T C C T G A C G A T G A T C