Information for 5-CAACCAATCR (Motif 5)

A T G C T C G A C T G A A G T C A G T C G T C A C G T A A G C T T G A C T C G A
Reverse Opposite:
A G C T A C T G C T G A A C G T A C G T A C T G C T A G A G C T A G C T T A C G
p-value:1e-33
log p-value:-7.756e+01
Information Content per bp:1.707
Number of Target Sequences with motif85.0
Percentage of Target Sequences with motif9.11%
Number of Background Sequences with motif735.7
Percentage of Background Sequences with motif1.74%
Average Position of motif in Targets50.1 +/- 26.1bp
Average Position of motif in Background45.6 +/- 38.1bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.91
Offset:-2
Orientation:forward strand
Alignment:--CAACCAATCR
ACTAGCCAATCA
 A C G T A C G T A T G C T C G A C T G A A G T C A G T C G T C A C G T A A G C T T G A C T C G A
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

NFYB/MA0502.1/Jaspar

Match Rank:2
Score:0.91
Offset:-4
Orientation:forward strand
Alignment:----CAACCAATCR-
AAATGGACCAATCAG
 A C G T A C G T A C G T A C G T A T G C T C G A C T G A A G T C A G T C G T C A C G T A A G C T T G A C T C G A A C G T
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

NFY(CCAAT)/Promoter/Homer

Match Rank:3
Score:0.91
Offset:1
Orientation:forward strand
Alignment:CAACCAATCR-
-AGCCAATCGG
 A T G C T C G A C T G A A G T C A G T C G T C A C G T A A G C T T G A C T C G A A C G T
A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

NFYA/MA0060.2/Jaspar

Match Rank:4
Score:0.84
Offset:-1
Orientation:reverse strand
Alignment:-CAACCAATCR-------
TGGACCAATCAGCACTCT
 A C G T A T G C T C G A C T G A A G T C A G T C G T C A C G T A A G C T T G A C T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

Dux/MA0611.1/Jaspar

Match Rank:5
Score:0.78
Offset:3
Orientation:forward strand
Alignment:CAACCAATCR-
---CCAATCAA
 A T G C T C G A C T G A A G T C A G T C G T C A C G T A A G C T T G A C T C G A A C G T
A C G T A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A

PH0005.1_Barhl1/Jaspar

Match Rank:6
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--CAACCAATCR----
AACAACCAATTAATTC
 A C G T A C G T A T G C T C G A C T G A A G T C A G T C G T C A C G T A A G C T T G A C T C G A A C G T A C G T A C G T A C G T
G T C A C T G A G T A C T C G A C T G A A T G C G A T C C T G A G C T A A C G T G A C T C G T A C T G A A C G T C G A T G A T C

PH0026.1_Duxbl/Jaspar

Match Rank:7
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-CAACCAATCR------
CGACCCAATCAACGGTG
 A C G T A T G C T C G A C T G A A G T C A G T C G T C A C G T A A G C T T G A C T C G A A C G T A C G T A C G T A C G T A C G T A C G T
A G T C C T A G C T G A A G T C A G T C A G T C G T C A G T C A A G C T A G T C C G T A C T G A A G T C T A C G T C A G G C A T T A C G

NFIC/MA0161.1/Jaspar

Match Rank:8
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:CAACCAATCR
-TGCCAA---
 A T G C T C G A C T G A A G T C A G T C G T C A C G T A A G C T T G A C T C G A
A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:9
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--CAACCAATCR
HNRAATCAAT--
 A C G T A C G T A T G C T C G A C T G A A G T C A G T C G T C A C G T A A G C T T G A C T C G A
G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T A C G T A C G T

PBX1/MA0070.1/Jaspar

Match Rank:10
Score:0.70
Offset:0
Orientation:forward strand
Alignment:CAACCAATCR--
CCATCAATCAAA
 A T G C T C G A C T G A A G T C A G T C G T C A C G T A A G C T T G A C T C G A A C G T A C G T
G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A