Information for 1-CTCCCCTTTG (Motif 3)

A T G C A C G T A G T C A G T C G T A C T A G C A C G T A C G T A G C T A C T G
Reverse Opposite:
T G A C T C G A G T C A T G C A A T C G C A T G C T A G C T A G G T C A A T C G
p-value:1e-11
log p-value:-2.551e+01
Information Content per bp:1.825
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif2.58%
Number of Background Sequences with motif164.9
Percentage of Background Sequences with motif0.39%
Average Position of motif in Targets52.3 +/- 28.1bp
Average Position of motif in Background51.3 +/- 24.9bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0128.1_Gcm1_2/Jaspar

Match Rank:1
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---CTCCCCTTTG----
NTCNTCCCCTATNNGNN
 A C G T A C G T A C G T A T G C A C G T A G T C A G T C G T A C T A G C A C G T A C G T A G C T A C T G A C G T A C G T A C G T A C G T
T G A C C A G T A G T C T A G C A G C T A G T C T A G C G T A C G T A C A G C T C T G A A G C T C A T G A T G C T A C G G T A C G C T A

MZF1/MA0056.1/Jaspar

Match Rank:2
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:CTCCCCTTTG
-TCCCCA---
 A T G C A C G T A G T C A G T C G T A C T A G C A C G T A C G T A G C T A C T G
A C G T A G C T A G T C G T A C A G T C G T A C T C G A A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:3
Score:0.65
Offset:4
Orientation:forward strand
Alignment:CTCCCCTTTG--
----CCTTTGTT
 A T G C A C G T A G T C A G T C G T A C T A G C A C G T A C G T A G C T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CTCCCCTTTG
CTGACCTTTG
 A T G C A C G T A G T C A G T C G T A C T A G C A C G T A C G T A G C T A C T G
A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G

KLF13/MA0657.1/Jaspar

Match Rank:5
Score:0.64
Offset:-6
Orientation:forward strand
Alignment:------CTCCCCTTTG--
ATGCCACGCCCCTTTTTG
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C A C G T A G T C A G T C G T A C T A G C A C G T A C G T A G C T A C T G A C G T A C G T
C T G A C A G T C T A G G T A C G T A C C T G A A T G C C T A G A G T C G T A C G A T C G T A C A G C T G A C T C A G T C A G T C A G T C A T G

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:6
Score:0.63
Offset:4
Orientation:forward strand
Alignment:CTCCCCTTTG--
----CCWTTGTY
 A T G C A C G T A G T C A G T C G T A C T A G C A C G T A C G T A G C T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T

Sox3/MA0514.1/Jaspar

Match Rank:7
Score:0.62
Offset:4
Orientation:forward strand
Alignment:CTCCCCTTTG----
----CCTTTGTTTT
 A T G C A C G T A G T C A G T C G T A C T A G C A C G T A C G T A G C T A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:8
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CTCCCCTTTG------
-TGACCTTTGCCCTAN
 A T G C A C G T A G T C A G T C G T A C T A G C A C G T A C G T A G C T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G A T C G A C T T C G A T A G C

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:9
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:CTCCCCTTTG----
----CCTTTGAWGT
 A T G C A C G T A G T C A G T C G T A C T A G C A C G T A C G T A G C T A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C A G T C A C G T A C G T A C G T A C T G C G T A C G T A A T C G A C G T

PB0076.1_Sp4_1/Jaspar

Match Rank:10
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----CTCCCCTTTG--
GGTCCCGCCCCCTTCTC
 A C G T A C G T A C G T A C G T A C G T A T G C A C G T A G T C A G T C G T A C T A G C A C G T A C G T A G C T A C T G A C G T A C G T
A C T G C A T G G A C T G T A C G T A C A G T C C T A G A G T C A T G C A G T C G T A C A G T C G A C T G A C T T A G C A G C T A G T C