Information for 12-AGAGGAGAGGACA (Motif 18)

C G T A A C T G C G T A A C T G A C T G C G T A A T C G C G T A C T A G A C T G C T G A A T G C C T G A
Reverse Opposite:
A G C T A T C G A G C T A G T C A G T C A C G T A T G C A C G T A G T C A G T C A C G T A G T C A C G T
p-value:1e-6
log p-value:-1.392e+01
Information Content per bp:1.903
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.48%
Number of Background Sequences with motif4.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets25.7 +/- 17.3bp
Average Position of motif in Background58.1 +/- 28.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:1
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AGAGGAGAGGACA
TAGGGCAAAGGTCA
 A C G T C G T A A C T G C G T A A C T G A C T G C G T A A T C G C G T A C T A G A C T G C T G A A T G C C T G A
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:2
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AGAGGAGAGGACA
GTAGGGCAAAGGTCA
 A C G T A C G T C G T A A C T G C G T A A C T G A C T G C G T A A T C G C G T A C T A G A C T G C T G A A T G C C T G A
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:3
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-AGAGGAGAGGACA
TGGGGCAAAGGTCA
 A C G T C G T A A C T G C G T A A C T G A C T G C G T A A T C G C G T A C T A G A C T G C T G A A T G C C T G A
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:4
Score:0.55
Offset:5
Orientation:forward strand
Alignment:AGAGGAGAGGACA
-----TRAGGTCA
 C G T A A C T G C G T A A C T G A C T G C G T A A T C G C G T A C T A G A C T G C T G A A T G C C T G A
A C G T A C G T A C G T A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A

SPIB/MA0081.1/Jaspar

Match Rank:5
Score:0.54
Offset:0
Orientation:forward strand
Alignment:AGAGGAGAGGACA
AGAGGAA------
 C G T A A C T G C G T A A C T G A C T G C G T A A T C G C G T A C T A G A C T G C T G A A T G C C T G A
C G T A T A C G T G C A C T A G C A T G C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:6
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-AGAGGAGAGGACA
GAGGTCAAAGGTCA
 A C G T C G T A A C T G C G T A A C T G A C T G C G T A A T C G C G T A C T A G A C T G C T G A A T G C C T G A
T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A

NR2C2/MA0504.1/Jaspar

Match Rank:7
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--AGAGGAGAGGACA
AGGGGTCAGAGGTCA
 A C G T A C G T C G T A A C T G C G T A A C T G A C T G C G T A A T C G C G T A C T A G A C T G C T G A A T G C C T G A
T G C A T C A G T C A G A C T G C A T G C A G T A T G C C T G A C T A G C T G A C T A G C A T G A C G T A G T C C T G A

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:8
Score:0.52
Offset:5
Orientation:forward strand
Alignment:AGAGGAGAGGACA
-----AGRGGTCA
 C G T A A C T G C G T A A C T G A C T G C G T A A T C G C G T A C T A G A C T G C T G A A T G C C T G A
A C G T A C G T A C G T A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A

PB0128.1_Gcm1_2/Jaspar

Match Rank:9
Score:0.52
Offset:-5
Orientation:forward strand
Alignment:-----AGAGGAGAGGACA
TGCGCATAGGGGAGGAG-
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G C G T A A C T G A C T G C G T A A T C G C G T A C T A G A C T G C T G A A T G C C T G A
C G A T C A T G A T G C T A C G G T A C T C G A A G C T T C G A C A T G A C T G A C T G A C T G T C G A A T C G T C A G G T C A A C T G A C G T

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:10
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:AGAGGAGAGGACA
-ANGNAAAGGTCA
 C G T A A C T G C G T A A C T G A C T G C G T A A T C G C G T A C T A G A C T G C T G A A T G C C T G A
A C G T C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A