Information for 9-BCAGACGTGGGGC (Motif 15)

A G T C A G T C C T G A A C T G G T C A A G T C A C T G A G C T A C T G A T C G A C T G A C T G A G T C
Reverse Opposite:
A C T G A G T C A G T C A T G C A G T C T C G A A G T C A C T G A C G T A G T C A G C T A C T G T A C G
p-value:1e-7
log p-value:-1.789e+01
Information Content per bp:1.868
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.08%
Number of Background Sequences with motif35.8
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets55.0 +/- 23.6bp
Average Position of motif in Background52.2 +/- 24.4bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:BCAGACGTGGGGC
CCAGACRSVB---
 A G T C A G T C C T G A A C T G G T C A A G T C A C T G A G C T A C T G A T C G A C T G A C T G A G T C
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:2
Score:0.64
Offset:2
Orientation:forward strand
Alignment:BCAGACGTGGGGC
--GGACGTGC---
 A G T C A G T C C T G A A C T G G T C A A G T C A C T G A G C T A C T G A T C G A C T G A C T G A G T C
A C G T A C G T T A C G A C T G T C G A A G T C A C T G A C G T A C T G T A G C A C G T A C G T A C G T

HINFP/MA0131.2/Jaspar

Match Rank:3
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--BCAGACGTGGGGC
NCGCGGACGTTG---
 A C G T A C G T A G T C A G T C C T G A A C T G G T C A A G T C A C T G A G C T A C T G A T C G A C T G A C T G A G T C
T G A C G T A C T A C G T A G C C T A G A T C G C G T A T A G C T A C G A G C T A C G T T A C G A C G T A C G T A C G T

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:4
Score:0.62
Offset:2
Orientation:forward strand
Alignment:BCAGACGTGGGGC
--RTACGTGC---
 A G T C A G T C C T G A A C T G G T C A A G T C A C T G A G C T A C T G A T C G A C T G A C T G A G T C
A C G T A C G T C T G A C A G T C T G A A G T C C T A G G A C T A T C G G T A C A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:BCAGACGTGGGGC
CCAGACAG-----
 A G T C A G T C C T G A A C T G G T C A A G T C A C T G A G C T A C T G A T C G A C T G A C T G A G T C
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:BCAGACGTGGGGC
GGGTACGTGC---
 A G T C A G T C C T G A A C T G G T C A A G T C A C T G A G C T A C T G A T C G A C T G A C T G A G T C
C T A G A T C G T C A G C A G T C T G A A T G C A C T G A G C T A C T G G T A C A C G T A C G T A C G T

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:7
Score:0.59
Offset:3
Orientation:forward strand
Alignment:BCAGACGTGGGGC
---TACGTGCV--
 A G T C A G T C C T G A A C T G G T C A A G T C A C T G A G C T A C T G A T C G A C T G A C T G A G T C
A C G T A C G T A C G T A C G T C T G A G A T C A T C G G A C T T C A G G T A C T A G C A C G T A C G T

Sp1(Zf)/Promoter/Homer

Match Rank:8
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:BCAGACGTGGGGC-
--GGGGGCGGGGCC
 A G T C A G T C C T G A A C T G G T C A A G T C A C T G A G C T A C T G A T C G A C T G A C T G A G T C A C G T
A C G T A C G T T C A G C A T G C T A G A C T G A C T G A G T C A C T G A C T G C T A G T A C G A G T C A T G C

SP1/MA0079.3/Jaspar

Match Rank:9
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:BCAGACGTGGGGC
--GGGGGCGGGGC
 A G T C A G T C C T G A A C T G G T C A A G T C A C T G A G C T A C T G A T C G A C T G A C T G A G T C
A C G T A C G T T C A G C T A G C T A G A C T G A C T G G T A C C T A G A C T G C T A G T C A G T G A C

PB0060.1_Smad3_1/Jaspar

Match Rank:10
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----BCAGACGTGGGGC
CAAATCCAGACATCACA-
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C T G A A C T G G T C A A G T C A C T G A G C T A C T G A T C G A C T G A C T G A G T C
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A A C G T