Information for 9-RGTGCCCCKASAGSAC (Motif 9)

C T A G A C T G A C G T A C T G A G T C A G T C A G T C T A G C A C G T C G T A A T C G C T G A A C T G A T C G C G T A A G T C
Reverse Opposite:
A C T G C G A T A T G C T A G C A G C T A T G C A C G T G T C A A C T G A C T G A C T G A C T G A G T C C G T A A G T C A G T C
p-value:1e-9
log p-value:-2.273e+01
Information Content per bp:1.878
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.11%
Number of Background Sequences with motif3.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets56.2 +/- 21.1bp
Average Position of motif in Background40.1 +/- 12.1bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:1
Score:0.63
Offset:2
Orientation:forward strand
Alignment:RGTGCCCCKASAGSAC
--TGCCCTGAGGGCA-
 C T A G A C T G A C G T A C T G A G T C A G T C A G T C T A G C A C G T C G T A A T C G C T G A A C T G A T C G C G T A A G T C
A C G T A C G T G C A T A T C G A G T C A G T C A G T C A G C T A C T G T C G A T C A G A C T G A C T G A T G C C G T A A C G T

TFAP2C(var.3)/MA0815.1/Jaspar

Match Rank:2
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:RGTGCCCCKASAGSAC
--TGCCCTNAGGGCA-
 C T A G A C T G A C G T A C T G A G T C A G T C A G T C T A G C A C G T C G T A A T C G C T G A A C T G A T C G C G T A A G T C
A C G T A C G T G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A A C G T

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:3
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:RGTGCCCCKASAGSAC
--TGCCCNNAGGGCA-
 C T A G A C T G A C G T A C T G A G T C A G T C A G T C T A G C A C G T C G T A A T C G C T G A A C T G A T C G C G T A A G T C
A C G T A C G T G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A A C G T

PB0133.1_Hic1_2/Jaspar

Match Rank:4
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---RGTGCCCCKASAGSAC
GGGTGTGCCCAAAAGG---
 A C G T A C G T A C G T C T A G A C T G A C G T A C T G A G T C A G T C A G T C T A G C A C G T C G T A A T C G C T G A A C T G A T C G C G T A A G T C
C A T G A T C G C A T G C A G T C T A G A C G T C T A G A G T C A G T C G T A C G T C A C G T A C G T A G T C A C T A G T A C G A C G T A C G T A C G T

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:5
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:RGTGCCCCKASAGSAC-
--TGWCCTCARNTGACC
 C T A G A C T G A C G T A C T G A G T C A G T C A G T C T A G C A C G T C G T A A T C G C T G A A C T G A T C G C G T A A G T C A C G T
A C G T A C G T G C A T T A C G C G T A G T A C A G T C G A C T A G T C T C G A T C A G T C G A C G A T T C A G T G C A G T A C G A T C

THAP1/MA0597.1/Jaspar

Match Rank:6
Score:0.56
Offset:1
Orientation:forward strand
Alignment:RGTGCCCCKASAGSAC
-CTGCCCGCA------
 C T A G A C T G A C G T A C T G A G T C A G T C A G T C T A G C A C G T C G T A A T C G C T G A A C T G A T C G C G T A A G T C
A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T A C G T A C G T A C G T A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:7
Score:0.56
Offset:1
Orientation:forward strand
Alignment:RGTGCCCCKASAGSAC
-ATGCCCACC------
 C T A G A C T G A C G T A C T G A G T C A G T C A G T C T A G C A C G T C G T A A T C G C T G A A C T G A T C G C G T A A G T C
A C G T T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C A C G T A C G T A C G T A C G T A C G T A C G T

PB0052.1_Plagl1_1/Jaspar

Match Rank:8
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----RGTGCCCCKASAGSAC
TTGGGGGCGCCCCTAG-----
 A C G T A C G T A C G T A C G T A C G T C T A G A C T G A C G T A C T G A G T C A G T C A G T C T A G C A C G T C G T A A T C G C T G A A C T G A T C G C G T A A G T C
A C G T G A C T C T A G C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C A C G T T C G A T A C G A C G T A C G T A C G T A C G T A C G T

MZF1(var.2)/MA0057.1/Jaspar

Match Rank:9
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:RGTGCCCCKASAGSAC
-TTCCCCCTAC-----
 C T A G A C T G A C G T A C T G A G T C A G T C A G T C T A G C A C G T C G T A A T C G C T G A A C T G A T C G C G T A A G T C
A C G T A G C T G A C T G T A C G T A C A T G C G T A C G T A C A C G T G T A C T A G C A C G T A C G T A C G T A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:RGTGCCCCKASAGSAC
--TGCCCAGNHW----
 C T A G A C T G A C G T A C T G A G T C A G T C A G T C T A G C A C G T C G T A A T C G C T G A A C T G A T C G C G T A A G T C
A C G T A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A A C G T A C G T A C G T A C G T