Information for 5-GRGAGCAGCTCCAGWG (Motif 5)

C A T G C T A G A C T G C T G A C T A G A G T C C G T A A T C G A G T C C G A T G A T C A G T C C G T A A C T G G C T A A C T G
Reverse Opposite:
G T A C C G A T A G T C C G A T A C T G C T A G C G T A T C A G A T G C A C G T A C T G A G T C A G C T A G T C A G C T G T A C
p-value:1e-13
log p-value:-3.135e+01
Information Content per bp:1.726
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif2.00%
Number of Background Sequences with motif14.9
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets40.4 +/- 29.1bp
Average Position of motif in Background47.8 +/- 20.8bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:1
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GRGAGCAGCTCCAGWG
ADGGYAGYAGCATCT---
 A C G T A C G T C A T G C T A G A C T G C T G A C T A G A G T C C G T A A T C G A G T C C G A T G A T C A G T C C G T A A C T G G C T A A C T G
C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T A C G T A C G T A C G T

PB0003.1_Ascl2_1/Jaspar

Match Rank:2
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GRGAGCAGCTCCAGWG
NNNNAGCAGCTGCTGAN
 A C G T C A T G C T A G A C T G C T G A C T A G A G T C C G T A A T C G A G T C C G A T G A T C A G T C C G T A A C T G G C T A A C T G
G T A C C G T A C T A G A C G T T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T C A G T G C A T C A G

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GRGAGCAGCTCCAGWG
GGGAGGACNG------
 C A T G C T A G A C T G C T G A C T A G A G T C C G T A A T C G A G T C C G A T G A T C A G T C C G T A A C T G G C T A A C T G
C T A G A C T G A C T G C G T A A C T G A T C G C G T A A T G C A G C T T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Myod1/MA0499.1/Jaspar

Match Rank:4
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GRGAGCAGCTCCAGWG
NGNGACAGCTGCN---
 C A T G C T A G A C T G C T G A C T A G A G T C C G T A A T C G A G T C C G A T G A T C A G T C C G T A A C T G G C T A A C T G
T C G A T C A G A T C G T C A G T C G A A G T C C G T A A C T G T A G C C G A T A C T G A T G C C G T A A C G T A C G T A C G T

Myog/MA0500.1/Jaspar

Match Rank:5
Score:0.55
Offset:3
Orientation:forward strand
Alignment:GRGAGCAGCTCCAGWG
---GACAGCTGCAG--
 C A T G C T A G A C T G C T G A C T A G A G T C C G T A A T C G A G T C C G A T G A T C A G T C C G T A A C T G G C T A A C T G
A C G T A C G T A C G T T C A G T C G A A G T C C G T A A C T G T A G C A C G T A C T G T A G C C T G A T A C G A C G T A C G T

Ascl2/MA0816.1/Jaspar

Match Rank:6
Score:0.55
Offset:3
Orientation:forward strand
Alignment:GRGAGCAGCTCCAGWG
---AGCAGCTGCT---
 C A T G C T A G A C T G C T G A C T A G A G T C C G T A A T C G A G T C C G A T G A T C A G T C C G T A A C T G G C T A A C T G
A C G T A C G T A C G T T C G A T C A G G T A C C G T A A T C G T G A C C G A T A C T G A G T C G A C T A C G T A C G T A C G T

Tcf12/MA0521.1/Jaspar

Match Rank:7
Score:0.55
Offset:3
Orientation:forward strand
Alignment:GRGAGCAGCTCCAGWG
---AACAGCTGCAG--
 C A T G C T A G A C T G C T G A C T A G A G T C C G T A A T C G A G T C C G A T G A T C A G T C C G T A A C T G G C T A A C T G
A C G T A C G T A C G T T C G A T C G A A G T C C G T A C T A G T A G C A C G T A C T G T A G C C G T A T A C G A C G T A C G T

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:8
Score:0.54
Offset:3
Orientation:forward strand
Alignment:GRGAGCAGCTCCAGWG
---AGCAGCTGCTNN-
 C A T G C T A G A C T G C T G A C T A G A G T C C G T A A T C G A G T C C G A T G A T C A G T C C G T A A C T G G C T A A C T G
A C G T A C G T A C G T C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A T C G A G T C A C G T

NHLH1/MA0048.2/Jaspar

Match Rank:9
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:GRGAGCAGCTCCAGWG
---CGCAGCTGCG---
 C A T G C T A G A C T G C T G A C T A G A G T C C G T A A T C G A G T C C G A T G A T C A G T C C G T A A C T G G C T A A C T G
A C G T A C G T A C G T T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G A C G T A C G T A C G T

SOX4/MA0867.1/Jaspar

Match Rank:10
Score:0.52
Offset:2
Orientation:forward strand
Alignment:GRGAGCAGCTCCAGWG--
--GAACAATTGCAGTGTT
 C A T G C T A G A C T G C T G A C T A G A G T C C G T A A T C G A G T C C G A T G A T C A G T C C G T A A C T G G C T A A C T G A C G T A C G T
A C G T A C G T C T A G C G T A C T G A A G T C C T G A C T G A A C G T A C G T C A T G A G T C C T G A A C T G A C G T C T A G A G C T C G A T