Information for 6-GGAATAAAAG (Motif 18)

A C T G A C T G C G T A C G T A A C G T C G T A C G T A C G T A C G T A A C T G
Reverse Opposite:
A G T C A C G T A C G T A C G T A C G T C G T A A C G T A C G T A G T C A G T C
p-value:1e-6
log p-value:-1.550e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.89%
Number of Background Sequences with motif5.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets68.2 +/- 30.3bp
Average Position of motif in Background48.4 +/- 33.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:1
Score:0.76
Offset:0
Orientation:forward strand
Alignment:GGAATAAAAG
GTCATAAAAN
 A C T G A C T G C G T A C G T A A C G T C G T A C G T A C G T A C G T A A C T G
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

CDX2/MA0465.1/Jaspar

Match Rank:2
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--GGAATAAAAG
AAGCCATAAAA-
 A C G T A C G T A C T G A C T G C G T A C G T A A C G T C G T A C G T A C G T A C G T A A C T G
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T

CDX1/MA0878.1/Jaspar

Match Rank:3
Score:0.75
Offset:0
Orientation:forward strand
Alignment:GGAATAAAAG
GCAATAAAA-
 A C T G A C T G C G T A C G T A A C G T C G T A C G T A C G T A C G T A A C T G
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:4
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-GGAATAAAAG
GGTAATAAAAA
 A C G T A C T G A C T G C G T A C G T A A C G T C G T A C G T A C G T A C G T A A C T G
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A

PH0013.1_Cdx2/Jaspar

Match Rank:5
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----GGAATAAAAG--
AAAGGTAATAAAATTT
 A C G T A C G T A C G T A C G T A C T G A C T G C G T A C G T A A C G T C G T A C G T A C G T A C G T A A C T G A C G T A C G T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T

Hoxd9/MA0913.1/Jaspar

Match Rank:6
Score:0.71
Offset:0
Orientation:forward strand
Alignment:GGAATAAAAG
GCAATAAAAA
 A C T G A C T G C G T A C G T A A C G T C G T A C G T A C G T A C G T A A C T G
T C A G G A T C T G C A C T G A C G A T G C T A G C T A G C T A C G T A G C T A

PH0046.1_Hoxa10/Jaspar

Match Rank:7
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---GGAATAAAAG---
TAGGTAATAAAATTCA
 A C G T A C G T A C G T A C T G A C T G C G T A C G T A A C G T C G T A C G T A C G T A C G T A A C T G A C G T A C G T A C G T
C A G T G T C A A C T G T C A G G A C T G T C A C T G A G C A T C G T A C G T A G C T A G C T A G C A T C A G T G T A C C G T A

HOXD13/MA0909.1/Jaspar

Match Rank:8
Score:0.70
Offset:0
Orientation:forward strand
Alignment:GGAATAAAAG
CCAATAAAAA
 A C T G A C T G C G T A C G T A A C G T C G T A C G T A C G T A C G T A A C T G
A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-GGAATAAAAG
NCYAATAAAA-
 A C G T A C T G A C T G C G T A C G T A A C G T C G T A C G T A C G T A C G T A A C T G
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T

PH0075.1_Hoxd10/Jaspar

Match Rank:10
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---GGAATAAAAG----
AATGCAATAAAATTTAT
 A C G T A C G T A C G T A C T G A C T G C G T A C G T A A C G T C G T A C G T A C G T A C G T A A C T G A C G T A C G T A C G T A C G T
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T