Information for 1-CCACYAGGTGGCR (Motif 1)

A G T C A G T C T C G A A T G C G A T C C T G A A C T G C T A G A C G T A C T G A C T G A G T C C T A G
Reverse Opposite:
A G T C A C T G A G T C A G T C G T C A A G T C A G T C A G C T C T A G A T C G A C G T A C T G A C T G
p-value:1e-33
log p-value:-7.805e+01
Information Content per bp:1.813
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif6.22%
Number of Background Sequences with motif79.9
Percentage of Background Sequences with motif0.17%
Average Position of motif in Targets44.8 +/- 25.7bp
Average Position of motif in Background47.6 +/- 27.9bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.92
Offset:-3
Orientation:reverse strand
Alignment:---CCACYAGGTGGCR----
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A G T C A G T C T C G A A T G C G A T C C T G A A C T G C T A G A C G T A C T G A C T G A G T C C T A G A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.92
Offset:-3
Orientation:forward strand
Alignment:---CCACYAGGTGGCR---
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T A G T C A G T C T C G A A T G C G A T C C T G A A C T G C T A G A C G T A C T G A C T G A G T C C T A G A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.91
Offset:-1
Orientation:reverse strand
Alignment:-CCACYAGGTGGCR------
GCCASCAGGGGGCGCYVNNG
 A C G T A G T C A G T C T C G A A T G C G A T C C T G A A C T G C T A G A C G T A C T G A C T G A G T C C T A G A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:CCACYAGGTGGCR
--AACAGATGGC-
 A G T C A G T C T C G A A T G C G A T C C T G A A C T G C T A G A C G T A C T G A C T G A G T C C T A G
A C G T A C G T C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T

PB0076.1_Sp4_1/Jaspar

Match Rank:5
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CCACYAGGTGGCR-----
-NNNAAGGGGGCGGGNNN
 A G T C A G T C T C G A A T G C G A T C C T G A A C T G C T A G A C G T A C T G A C T G A G T C C T A G A C G T A C G T A C G T A C G T A C G T
A C G T T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C

Hic1/MA0739.1/Jaspar

Match Rank:6
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:CCACYAGGTGGCR-
-----GGTTGGCAT
 A G T C A G T C T C G A A T G C G A T C C T G A A C T G C T A G A C G T A C T G A C T G A G T C C T A G A C G T
A C G T A C G T A C G T A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

YY1(Zf)/Promoter/Homer

Match Rank:7
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CCACYAGGTGGCR--
---CAAGATGGCGGC
 A G T C A G T C T C G A A T G C G A T C C T G A A C T G C T A G A C G T A C T G A C T G A G T C C T A G A C G T A C G T
A C G T A C G T A C G T T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:8
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CCACYAGGTGGCR
DCHCAGCAGGRGGCC
 A C G T A C G T A G T C A G T C T C G A A T G C G A T C C T G A A C T G C T A G A C G T A C T G A C T G A G T C C T A G
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CCACYAGGTGGCR
--NNCAGGTGNN-
 A G T C A G T C T C G A A T G C G A T C C T G A A C T G C T A G A C G T A C T G A C T G A G T C C T A G
A C G T A C G T C A G T T A C G A G T C C G T A A C T G A C T G A C G T A C T G A C G T T A C G A C G T

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:10
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CCACYAGGTGGCR
VNAVCAGCTGGC-
 A G T C A G T C T C G A A T G C G A T C C T G A A C T G C T A G A C G T A C T G A C T G A G T C C T A G
T C A G A C G T T C G A T A G C A G T C C G T A A C T G G T A C A C G T A C T G A T C G A G T C A C G T