Information for 5-AGGAGACGGG (Motif 18)

G T C A C T A G A T C G T G C A A T C G G T C A A G T C A C T G A C T G C A T G
Reverse Opposite:
G T A C T G A C G T A C C T A G A C G T A T G C A C G T A T G C A G T C C A G T
p-value:1e-9
log p-value:-2.084e+01
Information Content per bp:1.823
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif3.05%
Number of Background Sequences with motif268.7
Percentage of Background Sequences with motif0.56%
Average Position of motif in Targets49.0 +/- 26.0bp
Average Position of motif in Background50.4 +/- 27.5bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SP2/MA0516.1/Jaspar

Match Rank:1
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---AGGAGACGGG--
GGGNGGGGGCGGGGC
 A C G T A C G T A C G T G T C A C T A G A T C G T G C A A T C G G T C A A G T C A C T G A C T G C A T G A C G T A C G T
T A C G T A C G T A C G T C G A C T A G C T A G C T A G C T A G A C T G G T A C C T A G A T C G C T A G T C A G T A G C

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:2
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----AGGAGACGGG--
CTACTTGGATACGGAAT
 A C G T A C G T A C G T A C G T A C G T G T C A C T A G A T C G T G C A A T C G G T C A A G T C A C T G A C T G C A T G A C G T A C G T
A T G C A C G T T C G A A T G C C A G T G A C T T C A G A C T G C G T A A C G T C G T A G A T C T A C G T A C G C G T A C G T A G C A T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:AGGAGACGGG-
-CCAGACRSVB
 G T C A C T A G A T C G T G C A A T C G G T C A A G T C A C T G A C T G C A T G A C G T
A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:AGGAGACGGG
-CCAGACAG-
 G T C A C T A G A T C G T G C A A T C G G T C A A G T C A C T G A C T G C A T G
A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T

PB0076.1_Sp4_1/Jaspar

Match Rank:5
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----AGGAGACGGG---
NNNAAGGGGGCGGGNNN
 A C G T A C G T A C G T A C G T G T C A C T A G A T C G T G C A A T C G G T C A A G T C A C T G A C T G C A T G A C G T A C G T A C G T
T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C

PB0203.1_Zfp691_2/Jaspar

Match Rank:6
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----AGGAGACGGG--
NTNNNAGGAGTCTCNTN
 A C G T A C G T A C G T A C G T A C G T G T C A C T A G A T C G T G C A A T C G G T C A A G T C A C T G A C T G C A T G A C G T A C G T
A T C G C A G T A C G T G C T A C T A G C T G A A C T G A C T G C G T A A T C G A G C T G T A C G C A T T G A C T A C G G A C T G T C A

SP1/MA0079.3/Jaspar

Match Rank:7
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:AGGAGACGGG--
-GGGGGCGGGGC
 G T C A C T A G A T C G T G C A A T C G G T C A A G T C A C T G A C T G C A T G A C G T A C G T
A C G T T C A G C T A G C T A G A C T G A C T G G T A C C T A G A C T G C T A G T C A G T G A C

ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AGGAGACGGG--
TGGGGAAGGGCM
 G T C A C T A G A T C G T G C A A T C G G T C A A G T C A C T G A C T G C A T G A C G T A C G T
G A C T C T A G C T A G C T A G A C T G T C G A C T G A C T A G C T A G C T A G G T A C G T C A

Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer

Match Rank:9
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--AGGAGACGGG
GTGGGGGAGGGG
 A C G T A C G T G T C A C T A G A T C G T G C A A T C G G T C A A G T C A C T G A C T G C A T G
C T A G G C A T A C T G A C T G C T A G A C T G A C T G G C T A C A T G A C T G C A T G A T C G

Sp1(Zf)/Promoter/Homer

Match Rank:10
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:AGGAGACGGG---
-GGGGGCGGGGCC
 G T C A C T A G A T C G T G C A A T C G G T C A A G T C A C T G A C T G C A T G A C G T A C G T A C G T
A C G T T C A G C A T G C T A G A C T G A C T G A G T C A C T G A C T G C T A G T A C G A G T C A T G C