Information for 11-GGAGATTCYCCAC (Motif 17)

C T A G A C T G C G T A A C T G G T C A G A C T A C G T A G T C A G C T A T G C G T A C C G T A A T G C
Reverse Opposite:
A T C G A C G T A C T G A T C G C T G A A C T G C G T A C T G A A C G T A G T C A C G T A G T C A G T C
p-value:1e-9
log p-value:-2.210e+01
Information Content per bp:1.834
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.16%
Number of Background Sequences with motif17.3
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets55.2 +/- 26.5bp
Average Position of motif in Background45.7 +/- 25.1bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:1
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GGAGATTCYCCAC
GGAAATTCCC---
 C T A G A C T G C G T A A C T G G T C A G A C T A C G T A G T C A G C T A T G C G T A C C G T A A T G C
A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T A C G T A C G T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:2
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GGAGATTCYCCAC
GGGGATTCCCCC-
 C T A G A C T G C G T A A C T G G T C A G A C T A C G T A G T C A G C T A T G C G T A C C G T A A T G C
A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C A C G T

NFKB1/MA0105.4/Jaspar

Match Rank:3
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GGAGATTCYCCAC
AGGGGATTCCCCT-
 A C G T C T A G A C T G C G T A A C T G G T C A G A C T A C G T A G T C A G C T A T G C G T A C C G T A A T G C
T G C A C T A G C A T G C A T G C T A G T C G A G C A T A G C T G A T C G T A C T A G C G A T C A C G T A C G T

NFKB2/MA0778.1/Jaspar

Match Rank:4
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GGAGATTCYCCAC
AGGGGATTCCCCT-
 A C G T C T A G A C T G C G T A A C T G G T C A G A C T A C G T A G T C A G C T A T G C G T A C C G T A A T G C
T G C A T C A G A C T G C A T G C T A G T G C A G C A T G A C T G A T C G T A C G A T C G A T C A G C T A C G T

RELA/MA0107.1/Jaspar

Match Rank:5
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GGAGATTCYCCAC
GGAAATTCCC---
 C T A G A C T G C G T A A C T G G T C A G A C T A C G T A G T C A G C T A T G C G T A C C G T A A T G C
A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C A C G T A C G T A C G T

PB0203.1_Zfp691_2/Jaspar

Match Rank:6
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GGAGATTCYCCAC--
TACGAGACTCCTCTAAC
 A C G T A C G T C T A G A C T G C G T A A C T G G T C A G A C T A C G T A G T C A G C T A T G C G T A C C G T A A T G C A C G T A C G T
C A G T C T G A A T G C A C T G C G T A C A T G C T G A A T G C A C G T A G T C T G A C A G C T G A T C C G A T T G C A G T C A T A G C

MF0003.1_REL_class/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GGAGATTCYCCAC
GGAAATCCCC---
 C T A G A C T G C G T A A C T G G T C A G A C T A C G T A G T C A G C T A T G C G T A C C G T A A T G C
C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C A C G T A C G T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:8
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GGAGATTCYCCAC
NGGGGATTTCCC---
 A C G T A C G T C T A G A C T G C G T A A C T G G T C A G A C T A C G T A G T C A G C T A T G C G T A C C G T A A T G C
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C A C G T A C G T A C G T

MZF1/MA0056.1/Jaspar

Match Rank:9
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:GGAGATTCYCCAC
------TCCCCA-
 C T A G A C T G C G T A A C T G G T C A G A C T A C G T A G T C A G C T A T G C G T A C C G T A A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A G C T A G T C G T A C A G T C G T A C T C G A A C G T

REL/MA0101.1/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GGAGATTCYCCAC
GGGGATTTCC----
 A C G T C T A G A C T G C G T A A C T G G T C A G A C T A C G T A G T C A G C T A T G C G T A C C G T A A T G C
A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C A C G T A C G T A C G T A C G T