Information for 2-CAATCGATGGGCACAG (Motif 2)

A T G C G C T A G T C A C G A T A G T C A T C G C G T A A C G T A C T G A C T G A C T G A G T C C G T A A G T C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G G A C T A C T G A G T C A G T C A G T C C G T A A C G T A T G C T A C G C G T A A C G T C A G T A T C G
p-value:1e-11
log p-value:-2.756e+01
Information Content per bp:1.823
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.99%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.4 +/- 23.7bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0133.1_Hic1_2/Jaspar

Match Rank:1
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CAATCGATGGGCACAG--
--NNNNTTGGGCACNNCN
 A T G C G C T A G T C A C G A T A G T C A T C G C G T A A C G T A C T G A C T G A C T G A G T C C G T A A G T C C G T A A C T G A C G T A C G T
A C G T A C G T A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C

HIC2/MA0738.1/Jaspar

Match Rank:2
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:CAATCGATGGGCACAG
-----NGTGGGCAT--
 A T G C G C T A G T C A C G A T A G T C A T C G C G T A A C G T A C T G A C T G A C T G A G T C C G T A A G T C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T

PB0026.1_Gm397_1/Jaspar

Match Rank:3
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CAATCGATGGGCACAG----
---CAGATGTGCACATACGT
 A T G C G C T A G T C A C G A T A G T C A T C G C G T A A C G T A C T G A C T G A C T G A G T C C G T A A G T C C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G T A C G C T A C A T G C G T A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A A G C T G T C A G T A C C A T G G A C T

PB0104.1_Zscan4_1/Jaspar

Match Rank:4
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CAATCGATGGGCACAG----
---TACATGTGCACATAAAA
 A T G C G C T A G T C A C G A T A G T C A T C G C G T A A C G T A C T G A C T G A C T G A G T C C G T A A G T C C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A G T G T C A T G A C C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A A G C T G C T A G C T A C G T A G T C A

POL009.1_DCE_S_II/Jaspar

Match Rank:5
Score:0.54
Offset:11
Orientation:reverse strand
Alignment:CAATCGATGGGCACAG-
-----------CACAGN
 A T G C G C T A G T C A C G A T A G T C A T C G C G T A A C G T A C T G A C T G A C T G A G T C C G T A A G T C C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.54
Offset:3
Orientation:forward strand
Alignment:CAATCGATGGGCACAG
---WDNCTGGGCA---
 A T G C G C T A G T C A C G A T A G T C A T C G C G T A A C G T A C T G A C T G A C T G A G T C C G T A A G T C C G T A A C T G
A C G T A C G T A C G T G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T A C G T A C G T

SRF/MA0083.3/Jaspar

Match Rank:7
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---CAATCGATGGGCACAG
TGNCCATATATGGTCA---
 A C G T A C G T A C G T A T G C G C T A G T C A C G A T A G T C A T C G C G T A A C G T A C T G A C T G A C T G A G T C C G T A A G T C C G T A A C T G
G C A T A C T G G T C A G A T C A T G C C G T A C G A T T G C A A G C T G C T A G C A T T C A G A T C G C A G T T G A C C G T A A C G T A C G T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:CAATCGATGGGCACAG
--GTTAATGGCC----
 A T G C G C T A G T C A C G A T A G T C A T C G C G T A A C G T A C T G A C T G A C T G A G T C C G T A A G T C C G T A A C T G
A C G T A C G T A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T A C G T A C G T A C G T

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:9
Score:0.51
Offset:5
Orientation:forward strand
Alignment:CAATCGATGGGCACAG-
-----RGKGGGCGGAGC
 A T G C G C T A G T C A C G A T A G T C A T C G C G T A A C G T A C T G A C T G A C T G A G T C C G T A A G T C C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T C T G A T C A G C A G T C T A G A C T G C T A G G A T C A T C G A C T G C T G A T C A G G A T C

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:10
Score:0.51
Offset:6
Orientation:forward strand
Alignment:CAATCGATGGGCACAG
------CCAGGAACAG
 A T G C G C T A G T C A C G A T A G T C A T C G C G T A A C G T A C T G A C T G A C T G A G T C C G T A A G T C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G