Information for 12-GCCTGGATGRACA (Motif 18)

T A C G A T G C G A T C C G A T A T C G T A C G G T C A C A G T A C T G T C G A C T G A T A G C T C G A
Reverse Opposite:
A G C T A T C G G A C T A G C T T A G C G C T A C A G T A T G C A T G C G C T A C A T G A T C G A G T C
p-value:1e-6
log p-value:-1.562e+01
Information Content per bp:1.682
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif2.56%
Number of Background Sequences with motif187.4
Percentage of Background Sequences with motif0.39%
Average Position of motif in Targets53.5 +/- 25.8bp
Average Position of motif in Background50.6 +/- 33.1bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----GCCTGGATGRACA
GTCATGCHTGRCTGS---
 A C G T A C G T A C G T A C G T A C G T T A C G A T G C G A T C C G A T A T C G T A C G G T C A C A G T A C T G T C G A C T G A T A G C T C G A
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T A C G T A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:2
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GCCTGGATGRACA
AGGCCTAG-------
 A C G T A C G T T A C G A T G C G A T C C G A T A T C G T A C G G T C A C A G T A C T G T C G A C T G A T A G C T C G A
T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GCCTGGATGRACA
AGGCCTNG-------
 A C G T A C G T T A C G A T G C G A T C C G A T A T C G T A C G G T C A C A G T A C T G T C G A C T G A T A G C T C G A
C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SA0002.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GCCTGGATGRACA------
NNCCTGNAAAAAAAAAAAAA
 A C G T T A C G A T G C G A T C C G A T A T C G T A C G G T C A C A G T A C T G T C G A C T G A T A G C T C G A A C G T A C G T A C G T A C G T A C G T A C G T
G C T A C G T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A C T G A C T G A C T G A T C G A C T G A

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:5
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GCCTGGATGRACA
TGCCCNGGGGCA--
 A C G T T A C G A T G C G A T C C G A T A T C G T A C G G T C A C A G T A C T G T C G A C T G A T A G C T C G A
G A C T T A C G T A G C A G T C A G T C A C T G T C A G T C A G T C A G A T C G A T G C C T G A A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:6
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GCCTGGATGRACA
GGTCTGGCAT----
 A C G T T A C G A T G C G A T C C G A T A T C G T A C G G T C A C A G T A C T G T C G A C T G A T A G C T C G A
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T A C G T

SA0001.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GCCTGGATGRACA------
NNCCTGNAAAAAAAAAAAAA
 A C G T T A C G A T G C G A T C C G A T A T C G T A C G G T C A C A G T A C T G T C G A C T G A T A G C T C G A A C G T A C G T A C G T A C G T A C G T A C G T
G C T A G C T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A T C G A T C G A T C G A C T G A C T G A

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.53
Offset:-6
Orientation:reverse strand
Alignment:------GCCTGGATGRACA
NGTCACGCTTGGCTGC---
 A C G T A C G T A C G T A C G T A C G T A C G T T A C G A T G C G A T C C G A T A T C G T A C G G T C A C A G T A C T G T C G A C T G A T A G C T C G A
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C A C G T A C G T A C G T

SPDEF/MA0686.1/Jaspar

Match Rank:9
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GCCTGGATGRACA
ACCCGGATGTA--
 T A C G A T G C G A T C C G A T A T C G T A C G G T C A C A G T A C T G T C G A C T G A T A G C T C G A
C G T A T G A C T A G C G T A C T A C G C A T G C T G A G C A T T C A G G A C T C T G A A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GCCTGGATGRACA
CTGTCTGG-------
 A C G T A C G T T A C G A T G C G A T C C G A T A T C G T A C G G T C A C A G T A C T G T C G A C T G A T A G C T C G A
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T