Information for 6-TCSTTGGCCG (Motif 36)

C A G T A G T C T A C G A C G T A C G T A C T G A C T G A G T C A G T C C T A G
Reverse Opposite:
A G T C C T A G A C T G T A G C A G T C C G T A C G T A A T C G A C T G G C T A
p-value:1e-7
log p-value:-1.712e+01
Information Content per bp:1.821
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.95%
Number of Background Sequences with motif20.7
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets45.0 +/- 24.1bp
Average Position of motif in Background50.1 +/- 29.7bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.1/Jaspar

Match Rank:1
Score:0.66
Offset:3
Orientation:forward strand
Alignment:TCSTTGGCCG
---TTGGCA-
 C A G T A G T C T A C G A C G T A C G T A C T G A C T G A G T C A G T C C T A G
A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:2
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--TCSTTGGCCG
TGACCTTGACCT
 A C G T A C G T C A G T A G T C T A C G A C G T A C G T A C T G A C T G A G T C A G T C C T A G
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:TCSTTGGCCG-
--NTTGGCANN
 C A G T A G T C T A C G A C G T A C G T A C T G A C T G A G T C A G T C C T A G A C G T
A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NFY(CCAAT)/Promoter/Homer

Match Rank:4
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TCSTTGGCCG
CCGATTGGCT-
 A C G T C A G T A G T C T A C G A C G T A C G T A C T G A C T G A G T C A G T C C T A G
A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:5
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TCSTTGGCCG--
TGATTGGCTANN
 C A G T A G T C T A C G A C G T A C G T A C T G A C T G A G T C A G T C C T A G A C G T A C G T
A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:6
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TCSTTGGCCG
CCWTTGTYYB
 C A G T A G T C T A C G A C G T A C G T A C T G A C T G A G T C A G T C C T A G
A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:7
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--TCSTTGGCCG
TGACCTTGACCT
 A C G T A C G T C A G T A G T C T A C G A C G T A C G T A C T G A C T G A G T C A G T C C T A G
G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:8
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TCSTTGGCCG
YCTTTGTTCC
 C A G T A G T C T A C G A C G T A C G T A C T G A C T G A G T C A G T C C T A G
A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:TCSTTGGCCG
--CTTGGCAA
 C A G T A G T C T A C G A C G T A C G T A C T G A C T G A G T C A G T C C T A G
A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

PB0200.1_Zfp187_2/Jaspar

Match Rank:10
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---TCSTTGGCCG---
GAGCCCTTGTCCCTAA
 A C G T A C G T A C G T C A G T A G T C T A C G A C G T A C G T A C T G A C T G A G T C A G T C C T A G A C G T A C G T A C G T
A C T G C T G A C T A G G T A C A G T C A G T C G A C T A G C T T C A G G A C T G A T C A G T C G T A C G A C T G C A T T C A G