Information for 4-TAAATHACCT (Motif 16)

A C G T G T C A C G T A C G T A A C G T G C T A C G T A A G T C G T A C A C G T
Reverse Opposite:
C G T A A C T G A C T G A C G T C A G T C G T A A C G T A C G T A C G T C G T A
p-value:1e-5
log p-value:-1.268e+01
Information Content per bp:1.864
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif6.76%
Number of Background Sequences with motif138.6
Percentage of Background Sequences with motif0.30%
Average Position of motif in Targets43.9 +/- 26.3bp
Average Position of motif in Background50.0 +/- 27.9bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9/MA0485.1/Jaspar

Match Rank:1
Score:0.70
Offset:-5
Orientation:forward strand
Alignment:-----TAAATHACCT
GGCCATAAATCAC--
 A C G T A C G T A C G T A C G T A C G T A C G T G T C A C G T A C G T A A C G T G C T A C G T A A G T C G T A C A C G T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C A C G T A C G T

PH0073.1_Hoxc9/Jaspar

Match Rank:2
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----TAAATHACCT--
NNAATTAATGACCNNN
 A C G T A C G T A C G T A C G T A C G T G T C A C G T A C G T A A C G T G C T A C G T A A G T C G T A C A C G T A C G T A C G T
T G C A G C A T C T G A C T G A C G A T A C G T C G T A C G T A A G C T A C T G C T G A A G T C G A T C A G C T G T A C A G T C

PB0144.1_Lef1_2/Jaspar

Match Rank:3
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----TAAATHACCT-
GAAGATCAATCACTTA
 A C G T A C G T A C G T A C G T A C G T A C G T G T C A C G T A C G T A A C G T G C T A C G T A A G T C G T A C A C G T A C G T
T A C G C G T A T C G A T A C G G C T A C G A T A G T C C G T A C T G A C A G T G A T C C T G A G T A C A G C T G C A T C G T A

Hoxa9/MA0594.1/Jaspar

Match Rank:4
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----TAAATHACCT
GCCATAAATCA---
 A C G T A C G T A C G T A C G T A C G T G T C A C G T A C G T A A C G T G C T A C G T A A G T C G T A C A C G T
T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A A C G T A C G T A C G T

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:5
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----TAAATHACCT-
GAAGATCAATCACTAA
 A C G T A C G T A C G T A C G T A C G T A C G T G T C A C G T A C G T A A C G T G C T A C G T A A G T C G T A C A C G T A C G T
T A C G C T A G T C G A T A C G G C T A G C A T A G T C C G T A C T G A C A G T G A T C C T G A A T G C A C G T G C T A C G T A

PB0197.1_Zfp105_2/Jaspar

Match Rank:6
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----TAAATHACCT--
ATGGTTCAATAATTTTG
 A C G T A C G T A C G T A C G T A C G T A C G T G T C A C G T A C G T A A C G T G C T A C G T A A G T C G T A C A C G T A C G T A C G T
C T A G A G C T C A T G T A C G A C G T A G C T T G A C T G C A T G C A A G C T T C G A C G T A A G C T C A G T A G C T A C G T C T A G

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:7
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----TAAATHACCT
GGCCATAAATCA---
 A C G T A C G T A C G T A C G T A C G T A C G T G T C A C G T A C G T A A C G T G C T A C G T A A G T C G T A C A C G T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A A C G T A C G T A C G T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:8
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----TAAATHACCT
GGCCATAAATCA---
 A C G T A C G T A C G T A C G T A C G T A C G T G T C A C G T A C G T A A C G T G C T A C G T A A G T C G T A C A C G T
C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A A C G T A C G T A C G T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:9
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TAAATHACCT-
NNACTTACCTN
 A C G T G T C A C G T A C G T A A C G T G C T A C G T A A G T C G T A C A C G T A C G T
C T G A G A C T G C T A G A T C G C A T G A C T C G T A A G T C G A T C G C A T A C T G

Gfi1/MA0038.1/Jaspar

Match Rank:10
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TAAATHACCT
CAAATCACTG
 A C G T G T C A C G T A C G T A A C G T G C T A C G T A A G T C G T A C A C G T
A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G