Information for 6-TYAATGTTAG (Motif 20)

A C G T G A C T C G T A C G T A A C G T C T A G A C G T A C G T C G T A A C T G
Reverse Opposite:
A G T C A C G T C G T A C G T A G A T C C G T A A C G T C G A T C T G A C G T A
p-value:1e-8
log p-value:-1.843e+01
Information Content per bp:1.883
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif2.34%
Number of Background Sequences with motif152.6
Percentage of Background Sequences with motif0.31%
Average Position of motif in Targets55.2 +/- 26.2bp
Average Position of motif in Background50.6 +/- 24.7bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid5a/MA0602.1/Jaspar

Match Rank:1
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----TYAATGTTAG
NNTNNCAATATTAG
 A C G T A C G T A C G T A C G T A C G T G A C T C G T A C G T A A C G T C T A G A C G T A C G T C G T A A C T G
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G

PB0002.1_Arid5a_1/Jaspar

Match Rank:2
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----TYAATGTTAG
NNTNNCAATATTAG
 A C G T A C G T A C G T A C G T A C G T G A C T C G T A C G T A A C G T C T A G A C G T A C G T C G T A A C T G
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G

PB0172.1_Sox1_2/Jaspar

Match Rank:3
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---TYAATGTTAG--
CTATAATTGTTAGCG
 A C G T A C G T A C G T A C G T G A C T C G T A C G T A A C G T C T A G A C G T A C G T C G T A A C T G A C G T A C G T
G T A C A G C T C T G A G A C T G C T A C T G A G A C T A G C T T A C G A C G T A C G T T G C A A C G T A G T C T A C G

Sox5/MA0087.1/Jaspar

Match Rank:4
Score:0.60
Offset:2
Orientation:forward strand
Alignment:TYAATGTTAG
--ATTGTTA-
 A C G T G A C T C G T A C G T A A C G T C T A G A C G T A C G T C G T A A C T G
A C G T A C G T C G T A A C G T A C G T C T A G A G C T G A C T C G A T A C G T

PB0119.1_Foxa2_2/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TYAATGTTAG----
NCNTTTGTTATTTNN
 A C G T A C G T G A C T C G T A C G T A A C G T C T A G A C G T A C G T C G T A A C T G A C G T A C G T A C G T A C G T
A T G C A T G C A T C G A G C T C A G T C A G T C T A G G C A T G A C T T C G A C A G T G A C T G C A T A G C T A G C T

PB0121.1_Foxj3_2/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TYAATGTTAG------
NNCTTTGTTTTGNTNNN
 A C G T A C G T G A C T C G T A C G T A A C G T C T A G A C G T A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
G C A T A T G C G T A C C G A T G C A T C G A T C T A G C G A T C A G T C G A T A C G T C T A G C A T G G A C T T A C G G C A T A C G T

Foxd3/MA0041.1/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:forward strand
Alignment:TYAATGTTAG---
-GAATGTTTGTTT
 A C G T G A C T C G T A C G T A A C G T C T A G A C G T A C G T C G T A A C T G A C G T A C G T A C G T
A C G T C T A G G C T A G C T A G A C T C T A G A C G T C G A T C A G T C T A G G A C T A C G T A G C T

PB0062.1_Sox12_1/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:forward strand
Alignment:TYAATGTTAG----
TAATTGTTCTAAAC
 A C G T G A C T C G T A C G T A A C G T C T A G A C G T A C G T C G T A A C T G A C G T A C G T A C G T A C G T
G A C T G C T A C G T A A C G T C G A T C T A G C G A T G A C T T G A C G C A T G T C A C G T A G C T A G T A C

MF0011.1_HMG_class/Jaspar

Match Rank:9
Score:0.56
Offset:2
Orientation:forward strand
Alignment:TYAATGTTAG
--ATTGTT--
 A C G T G A C T C G T A C G T A A C G T C T A G A C G T A C G T C G T A A C T G
A C G T A C G T G C T A A C G T G A C T C T A G G C A T A G C T A C G T A C G T

Arid3a/MA0151.1/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-TYAATGTTAG
TTTAAT-----
 A C G T A C G T G A C T C G T A C G T A A C G T C T A G A C G T A C G T C G T A A C T G
G C A T A C G T A C G T C T G A C G T A A C G T A C G T A C G T A C G T A C G T A C G T