Information for 6-TTRGACTAAAAGAATG (Motif 12)

A C G T A C G T C T A G T A C G T G C A G T A C A G C T T C G A C G T A G T C A C G T A A C T G C G T A T C G A G A C T A C T G
Reverse Opposite:
G T A C C G T A A G C T A C G T G T A C C G A T A C G T A C G T A G C T C T G A A C T G A C G T A T G C A G T C C G T A C G T A
p-value:1e-9
log p-value:-2.139e+01
Information Content per bp:1.752
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif3.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets64.0 +/- 16.5bp
Average Position of motif in Background64.7 +/- 17.3bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0028.1_Hbp1_1/Jaspar

Match Rank:1
Score:0.57
Offset:2
Orientation:forward strand
Alignment:TTRGACTAAAAGAATG--
--ACTATGAATGAATGAT
 A C G T A C G T C T A G T A C G T G C A G T A C A G C T T C G A C G T A G T C A C G T A A C T G C G T A T C G A G A C T A C T G A C G T A C G T
A C G T A C G T G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:2
Score:0.54
Offset:2
Orientation:forward strand
Alignment:TTRGACTAAAAGAATG
--GTCATAAAAN----
 A C G T A C G T C T A G T A C G T G C A G T A C A G C T T C G A C G T A G T C A C G T A A C T G C G T A T C G A G A C T A C T G
A C G T A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T A C G T A C G T A C G T

PH0075.1_Hoxd10/Jaspar

Match Rank:3
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-TTRGACTAAAAGAATG
AATGCAATAAAATTTAT
 A C G T A C G T A C G T C T A G T A C G T G C A G T A C A G C T T C G A C G T A G T C A C G T A A C T G C G T A T C G A G A C T A C T G
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T

CDX1/MA0878.1/Jaspar

Match Rank:4
Score:0.52
Offset:2
Orientation:forward strand
Alignment:TTRGACTAAAAGAATG
--GCAATAAAA-----
 A C G T A C G T C T A G T A C G T G C A G T A C A G C T T C G A C G T A G T C A C G T A A C T G C G T A T C G A G A C T A C T G
A C G T A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T A C G T A C G T A C G T

PH0146.1_Pou3f1/Jaspar

Match Rank:5
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:TTRGACTAAAAGAATG----
---NANTTAATTAATTANNN
 A C G T A C G T C T A G T A C G T G C A G T A C A G C T T C G A C G T A G T C A C G T A A C T G C G T A T C G A G A C T A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A T G G C T A T G C A A G C T C A G T G T C A G C T A C G A T C G A T G C T A C G T A C A G T C A G T G T C A T C G A A C G T G A C T

PH0149.1_Pou3f4/Jaspar

Match Rank:6
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:TTRGACTAAAAGAATG----
---GANTTAATTAATTAANN
 A C G T A C G T C T A G T A C G T G C A G T A C A G C T T C G A C G T A G T C A C G T A A C T G C G T A T C G A G A C T A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T A G G C T A G T C A G A C T C G A T G T C A G C T A C G A T C G A T G C T A C G T A C A G T C A G T G T C A C G T A A C G T G A C T

PB0186.1_Tcf3_2/Jaspar

Match Rank:7
Score:0.52
Offset:2
Orientation:forward strand
Alignment:TTRGACTAAAAGAATG-
--AGCCGAAAAAAAAAT
 A C G T A C G T C T A G T A C G T G C A G T A C A G C T T C G A C G T A G T C A C G T A A C T G C G T A T C G A G A C T A C T G A C G T
A C G T A C G T C T G A T A C G A T G C T A G C A C T G C G T A C T G A G C T A G C T A G C T A T G C A G C T A T C G A G C T A G C A T

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.51
Offset:3
Orientation:forward strand
Alignment:TTRGACTAAAAGAATG
---DCYAAAAATAGM-
 A C G T A C G T C T A G T A C G T G C A G T A C A G C T T C G A C G T A G T C A C G T A A C T G C G T A T C G A G A C T A C T G
A C G T A C G T A C G T C A T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G A C T C T G A T C A G G T A C A C G T

PB0067.1_Sox18_1/Jaspar

Match Rank:9
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:TTRGACTAAAAGAATG---
---NNTNANAACAATTNNA
 A C G T A C G T C T A G T A C G T G C A G T A C A G C T T C G A C G T A G T C A C G T A A C T G C G T A T C G A G A C T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T C G A T C A G T G C A T C A G T C G T A T C A G C G T A G C T A A G T C G C T A C G T A C G A T C A G T T C A G C G T A T C G A

PH0142.1_Pou1f1/Jaspar

Match Rank:10
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:TTRGACTAAAAGAATG----
---GANTTAATTAATTANNN
 A C G T A C G T C T A G T A C G T G C A G T A C A G C T T C G A C G T A G T C A C G T A A C T G C G T A T C G A G A C T A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A C G G C T A G A T C G C A T C G A T G T C A G C T A C G A T C G A T C G T A C G T A C G A T C A G T G T C A G C T A A G C T G A T C