Information for 7-CTCTTGCCCTTAT (Motif 13)

A G T C A C G T A G T C A C G T A C G T A C T G A G T C A G T C A G T C A C G T A C G T C G T A A C G T
Reverse Opposite:
C G T A A C G T C G T A C G T A A C T G A C T G A C T G A G T C C G T A C G T A A C T G C G T A A C T G
p-value:1e-6
log p-value:-1.561e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets71.3 +/- 19.0bp
Average Position of motif in Background51.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THAP1/MA0597.1/Jaspar

Match Rank:1
Score:0.64
Offset:3
Orientation:forward strand
Alignment:CTCTTGCCCTTAT
---CTGCCCGCA-
 A G T C A C G T A G T C A C G T A C G T A C T G A G T C A G T C A G T C A C G T A C G T C G T A A C G T
A C G T A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:2
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CTCTTGCCCTTAT
CNNTTGACCTTTG
 A G T C A C G T A G T C A C G T A C G T A C T G A G T C A G T C A G T C A C G T A C G T C G T A A C G T
G A T C A G T C A G T C C A G T A G C T A C T G C G T A A G T C A T G C A G C T G A C T C G A T C A T G

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:3
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CTCTTGCCCTTAT
--BNTGDCCTTG-
 A G T C A C G T A G T C A C G T A C G T A C T G A G T C A G T C A G T C A C G T A C G T C G T A A C G T
A C G T A C G T A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T

Rarb/MA0857.1/Jaspar

Match Rank:4
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----CTCTTGCCCTTAT
TGACCTTTTGACCTTT-
 A C G T A C G T A C G T A C G T A G T C A C G T A G T C A C G T A C G T A C T G A G T C A G T C A G T C A C G T A C G T C G T A A C G T
G A C T T C A G T C G A T G A C A G T C A G C T G A C T C G A T A G C T T A C G G T C A T G A C G T A C A G C T G A C T C G A T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:5
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:CTCTTGCCCTTAT
----TGACCTYA-
 A G T C A C G T A G T C A C G T A C G T A C T G A G T C A G T C A G T C A C G T A C G T C G T A A C G T
A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CTCTTGCCCTTAT
NNACTTGCCTT---
 A C G T A G T C A C G T A G T C A C G T A C G T A C T G A G T C A G T C A G T C A C G T A C G T C G T A A C G T
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T A C G T A C G T

Nr2f6(var.2)/MA0728.1/Jaspar

Match Rank:7
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----CTCTTGCCCTTAT
TGACCTTTTGACCTC--
 A C G T A C G T A C G T A C G T A G T C A C G T A G T C A C G T A C G T A C T G A G T C A G T C A G T C A C G T A C G T C G T A A C G T
A G C T C T A G C G T A G T A C A G T C A C G T G A C T G C A T C A G T T C A G G T C A A G T C A G T C G A C T A G T C A C G T A C G T

Spz1/MA0111.1/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CTCTTGCCCTTAT
GCTGTTACCCT---
 A C G T A G T C A C G T A G T C A C G T A C G T A C T G A G T C A G T C A G T C A C G T A C G T C G T A A C G T
A C T G T G A C A G C T A T C G G C A T C G A T G C T A G T A C A G T C T A G C A G C T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:9
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:CTCTTGCCCTTAT
---GTGACCTT--
 A G T C A C G T A G T C A C G T A C G T A C T G A G T C A G T C A G T C A C G T A C G T C G T A A C G T
A C G T A C G T A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T

PB0146.1_Mafk_2/Jaspar

Match Rank:10
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CTCTTGCCCTTAT---
-CCTTGCAATTTTTNN
 A G T C A C G T A G T C A C G T A C G T A C T G A G T C A G T C A G T C A C G T A C G T C G T A A C G T A C G T A C G T A C G T
A C G T A G T C T A G C C A G T A C G T C T A G G T A C C T G A G T C A C G A T C G A T G A C T G A C T A G C T C A G T A G T C