Information for 9-GGCAGGCAGGCAG (Motif 13)

A C T G C T A G A G T C G T C A A C T G C T A G A G T C C G T A A C T G C T A G G T A C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G A G T C A G T C A C G T A C T G A G T C A G T C A C G T A C T G A G T C A G T C
p-value:1e-4
log p-value:-1.110e+01
Information Content per bp:1.874
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif2.94%
Number of Background Sequences with motif4.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets25.3 +/- 6.8bp
Average Position of motif in Background49.2 +/- 29.4bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GGCAGGCAGGCAG
TGGCAGNCTGCCAG
 A C G T A C T G C T A G A G T C G T C A A C T G C T A G A G T C C G T A A C T G C T A G G T A C C G T A A C T G
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----GGCAGGCAGGCAG
AGGTGNCAGACAG----
 A C G T A C G T A C G T A C G T A C T G C T A G A G T C G T C A A C T G C T A G A G T C C G T A A C T G C T A G G T A C C G T A A C T G
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GGCAGGCAGGCAG
-CCAGACAG----
 A C T G C T A G A G T C G T C A A C T G C T A G A G T C C G T A A C T G C T A G G T A C C G T A A C T G
A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:4
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GGCAGGCAGGCAG---
-SCAGYCADGCATGAC
 A C T G C T A G A G T C G T C A A C T G C T A G A G T C C G T A A C T G C T A G G T A C C G T A A C T G A C G T A C G T A C G T
A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:5
Score:0.59
Offset:5
Orientation:forward strand
Alignment:GGCAGGCAGGCAG--
-----ACAGGAAGTG
 A C T G C T A G A G T C G T C A A C T G C T A G A G T C C G T A A C T G C T A G G T A C C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A T A G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T T C A G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GGCAGGCAGGCAG
-CCAGACRSVB--
 A C T G C T A G A G T C G T C A A C T G C T A G A G T C C G T A A C T G C T A G G T A C C G T A A C T G
A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----GGCAGGCAGGCAG
AGGTGHCAGACA-----
 A C G T A C G T A C G T A C G T A C T G C T A G A G T C G T C A A C T G C T A G A G T C C G T A A C T G C T A G G T A C C G T A A C T G
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:8
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GGCAGGCAGGCAG
TGAGTGACAGSC--
 A C G T A C T G C T A G A G T C G T C A A C T G C T A G A G T C C G T A A C T G C T A G G T A C C G T A A C T G
C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C A C G T A C G T

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:9
Score:0.56
Offset:4
Orientation:forward strand
Alignment:GGCAGGCAGGCAG-
----AACAGGAAGT
 A C T G C T A G A G T C G T C A A C T G C T A G A G T C C G T A A C T G C T A G G T A C C G T A A C T G A C G T
A C G T A C G T A C G T A C G T T G C A C T G A A T G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T

ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer

Match Rank:10
Score:0.56
Offset:5
Orientation:forward strand
Alignment:GGCAGGCAGGCAG--
-----ACAGGAAGTG
 A C T G C T A G A G T C G T C A A C T G C T A G A G T C C G T A A C T G C T A G G T A C C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A T A G C T G C A A C T G A C T G C G T A C G T A C T A G G A C T T A C G