Information for 4-TKMAAATACT (Motif 12)

A C G T A C G T G T C A G T C A C G T A C G T A A C G T C G T A A G T C A C G T
Reverse Opposite:
T G C A A C T G A C G T C G T A A C G T A C G T A C G T A C G T G T C A C G T A
p-value:1e-6
log p-value:-1.506e+01
Information Content per bp:1.847
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif10.29%
Number of Background Sequences with motif311.2
Percentage of Background Sequences with motif0.64%
Average Position of motif in Targets52.9 +/- 29.4bp
Average Position of motif in Background49.5 +/- 29.3bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0106.1_Arid5a_2/Jaspar

Match Rank:1
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-TKMAAATACT------
CATACAATACGAAATAA
 A C G T A C G T A C G T G T C A G T C A C G T A C G T A A C G T C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A T G C C T A G G A C T C G T A T G A C C G T A T G C A A C G T T G C A T A G C T A C G C T G A C T G A C G T A A G C T T C G A T C G A

PB0187.1_Tcf7_2/Jaspar

Match Rank:2
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----TKMAAATACT-
NNNTTTNTAATACNG
 A C G T A C G T A C G T A C G T A C G T A C G T G T C A G T C A C G T A C G T A A C G T C G T A A G T C A C G T A C G T
C G A T C A G T C T A G C A G T C A G T C G A T T G C A A G C T G T C A C G T A C G A T C G T A G T A C T C A G C A T G

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TKMAAATACT
CCAAAAATAG-
 A C G T A C G T A C G T G T C A G T C A C G T A C G T A A C G T C G T A A G T C A C G T
G T A C G A C T C G T A C T G A T C G A C G T A G C T A C A G T C T G A T A C G A C G T

PB0174.1_Sox30_2/Jaspar

Match Rank:4
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----TKMAAATACT-
TAAGATTATAATACGG
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A G T C A C G T A C G T A A C G T C G T A A G T C A C G T A C G T
G A C T G T C A C G T A A C T G G T C A C G A T A G C T G T C A A C G T T C G A C G T A C A G T T G C A T A G C T A C G T A C G

LIN54/MA0619.1/Jaspar

Match Rank:5
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TKMAAATACT
NATTCAAAT---
 A C G T A C G T A C G T A C G T G T C A G T C A C G T A C G T A A C G T C G T A A G T C A C G T
C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T A C G T A C G T

Arid5a/MA0602.1/Jaspar

Match Rank:6
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TKMAAATACT--
NNTNNCAATATTAG
 A C G T A C G T A C G T A C G T G T C A G T C A C G T A C G T A A C G T C G T A A G T C A C G T A C G T A C G T
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G

PB0002.1_Arid5a_1/Jaspar

Match Rank:7
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TKMAAATACT--
NNTNNCAATATTAG
 A C G T A C G T A C G T A C G T G T C A G T C A C G T A C G T A A C G T C G T A A G T C A C G T A C G T A C G T
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---TKMAAATACT
TTATGCAAAT---
 A C G T A C G T A C G T A C G T A C G T G T C A G T C A C G T A C G T A A C G T C G T A A G T C A C G T
C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T

POU5F1B/MA0792.1/Jaspar

Match Rank:9
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--TKMAAATACT
TATGCAAAT---
 A C G T A C G T A C G T A C G T G T C A G T C A C G T A C G T A A C G T C G T A A G T C A C G T
G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T A C G T A C G T A C G T

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---TKMAAATACT
ATATGCAAAT---
 A C G T A C G T A C G T A C G T A C G T G T C A G T C A C G T A C G T A A C G T C G T A A G T C A C G T
G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T