Information for 2-TCTGTAHAAGAHTAAT (Motif 5)

A G C T A G T C A C G T C T A G A C G T C T G A G A T C C G T A C G T A A C T G C G T A G A C T A C G T C G T A G T C A A C G T
Reverse Opposite:
C G T A A C G T A C G T G T C A C G T A C G A T A G T C C G A T C G A T C T A G A G C T C G T A A G T C C G T A A C T G C T G A
p-value:1e-12
log p-value:-2.869e+01
Information Content per bp:1.782
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.19%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets40.8 +/- 23.3bp
Average Position of motif in Background45.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TCTGTAHAAGAHTAAT
GCTGTG----------
 A G C T A G T C A C G T C T A G A C G T C T G A G A T C C G T A C G T A A C T G C G T A G A C T A C G T C G T A G T C A A C G T
T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SA0001.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--TCTGTAHAAGAHTAAT--
NNCCTGNAAAAAAAAAAAAA
 A C G T A C G T A G C T A G T C A C G T C T A G A C G T C T G A G A T C C G T A C G T A A C T G C G T A G A C T A C G T C G T A G T C A A C G T A C G T A C G T
G C T A G C T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A T C G A T C G A T C G A C T G A C T G A

SA0002.1_at_AC_acceptor/Jaspar

Match Rank:3
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--TCTGTAHAAGAHTAAT--
NNCCTGNAAAAAAAAAAAAA
 A C G T A C G T A G C T A G T C A C G T C T A G A C G T C T G A G A T C C G T A C G T A A C T G C G T A G A C T A C G T C G T A G T C A A C G T A C G T A C G T
G C T A C G T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A C T G A C T G A C T G A T C G A C T G A

HNF1B/MA0153.2/Jaspar

Match Rank:4
Score:0.52
Offset:3
Orientation:forward strand
Alignment:TCTGTAHAAGAHTAAT
---GTTAATGATTAAC
 A G C T A G T C A C G T C T A G A C G T C T G A G A T C C G T A C G T A A C T G C G T A G A C T A C G T C G T A G T C A A C G T
A C G T A C G T A C G T C A T G A G C T G C A T C T G A G T C A G C A T T A C G C G T A C A G T G A C T C T G A T C G A G A T C

PH0158.1_Rhox11_2/Jaspar

Match Rank:5
Score:0.52
Offset:-5
Orientation:forward strand
Alignment:-----TCTGTAHAAGAHTAAT
AGGACGCTGTAAAGGGA----
 A C G T A C G T A C G T A C G T A C G T A G C T A G T C A C G T C T A G A C G T C T G A G A T C C G T A C G T A A C T G C G T A G A C T A C G T C G T A G T C A A C G T
C G T A T C A G C A T G G T C A G A T C C T A G T A G C C A G T C T A G G A C T G C T A C G T A G C T A C T A G T A C G T C A G G C T A A C G T A C G T A C G T A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:6
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-TCTGTAHAAGAHTAAT
GNCTATAAAAGG-----
 A C G T A G C T A G T C A C G T C T A G A C G T C T G A G A T C C G T A C G T A A C T G C G T A G A C T A C G T C G T A G T C A A C G T
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G A C G T A C G T A C G T A C G T A C G T

Rhox11/MA0629.1/Jaspar

Match Rank:7
Score:0.51
Offset:-5
Orientation:forward strand
Alignment:-----TCTGTAHAAGAHTAAT
AAGACGCTGTAAAGCGA----
 A C G T A C G T A C G T A C G T A C G T A G C T A G T C A C G T C T A G A C G T C T G A G A T C C G T A C G T A A C T G C G T A G A C T A C G T C G T A G T C A A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A A C G T A C G T A C G T A C G T

PH0157.1_Rhox11_1/Jaspar

Match Rank:8
Score:0.51
Offset:-5
Orientation:forward strand
Alignment:-----TCTGTAHAAGAHTAAT
AAGACGCTGTAAAGCGA----
 A C G T A C G T A C G T A C G T A C G T A G C T A G T C A C G T C T A G A C G T C T G A G A T C C G T A C G T A A C T G C G T A G A C T A C G T C G T A G T C A A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A A C G T A C G T A C G T A C G T

PB0198.1_Zfp128_2/Jaspar

Match Rank:9
Score:0.50
Offset:2
Orientation:forward strand
Alignment:TCTGTAHAAGAHTAAT
--TGTATATATATACC
 A G C T A G T C A C G T C T A G A C G T C T G A G A T C C G T A C G T A A C T G C G T A G A C T A C G T C G T A G T C A A C G T
A C G T A C G T C A G T C A T G G C A T C T G A G C A T C T G A G A C T C G T A G A C T C G T A G A C T C G T A T G A C A T G C

Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer

Match Rank:10
Score:0.50
Offset:2
Orientation:forward strand
Alignment:TCTGTAHAAGAHTAAT
--GGTTAAACATTAA-
 A G C T A G T C A C G T C T A G A C G T C T G A G A T C C G T A C G T A A C T G C G T A G A C T A C G T C G T A G T C A A C G T
A C G T A C G T C T A G C T A G G C A T C G A T C T G A G T C A G C T A A T G C C G T A C A G T G A C T C G T A T G C A A C G T