Information for 6-TGCCATKGCMATA (Motif 21)

A C G T A C T G A T G C G A T C C G T A A C G T A C G T A C T G G T A C G T C A G C T A C G A T T G C A
Reverse Opposite:
A C G T C G T A C G A T A C G T A C T G G T A C G T C A C G T A C G A T C A T G A T C G A G T C G T C A
p-value:1e-7
log p-value:-1.655e+01
Information Content per bp:1.706
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif2.86%
Number of Background Sequences with motif179.9
Percentage of Background Sequences with motif0.36%
Average Position of motif in Targets53.4 +/- 27.0bp
Average Position of motif in Background49.2 +/- 28.7bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---TGCCATKGCMATA
NGTTGCCATGGCAA--
 A C G T A C G T A C G T A C G T A C T G A T G C G A T C C G T A A C G T A C G T A C T G G T A C G T C A G C T A C G A T T G C A
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A C G T A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---TGCCATKGCMATA
GGTTGCCATGGCAA--
 A C G T A C G T A C G T A C G T A C T G A T G C G A T C C G T A A C G T A C G T A C T G G T A C G T C A G C T A C G A T T G C A
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A C G T A C G T

Ddit3::Cebpa/MA0019.1/Jaspar

Match Rank:3
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:TGCCATKGCMATA
-GGGATTGCATNN
 A C G T A C T G A T G C G A T C C G T A A C G T A C G T A C T G G T A C G T C A G C T A C G A T T G C A
A C G T T C A G A T C G A C T G C T G A A C G T A C G T C A T G G T A C C T G A A G C T A G T C A G C T

RFX5/MA0510.2/Jaspar

Match Rank:4
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---TGCCATKGCMATA
CGTTGCCATGGCAACG
 A C G T A C G T A C G T A C G T A C T G A T G C G A T C C G T A A C G T A C G T A C T G G T A C G T C A G C T A C G A T T G C A
A T G C C T A G A G C T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T G C A G A T C T A C G

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:5
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--TGCCATKGCMATA
GTTGCCATGGCAACM
 A C G T A C G T A C G T A C T G A T G C G A T C C G T A A C G T A C G T A C T G G T A C G T C A G C T A C G A T T G C A
C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:6
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--TGCCATKGCMATA-
GTTGCCATGGCAACCG
 A C G T A C G T A C G T A C T G A T G C G A T C C G T A A C G T A C G T A C T G G T A C G T C A G C T A C G A T T G C A A C G T
C T A G A G C T G A C T C T A G A G T C A G T C G T C A C G A T T C A G T C A G G A T C C T G A T C G A G A T C T A G C T C A G

RFX2/MA0600.2/Jaspar

Match Rank:7
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---TGCCATKGCMATA
CGTTGCCATGGCAACG
 A C G T A C G T A C G T A C G T A C T G A T G C G A T C C G T A A C G T A C G T A C T G G T A C G T C A G C T A C G A T T G C A
A T G C T C A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

Rfx1/MA0509.1/Jaspar

Match Rank:8
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--TGCCATKGCMATA
GTTGCCATGGNAAC-
 A C G T A C G T A C G T A C T G A T G C G A T C C G T A A C G T A C G T A C T G G T A C G T C A G C T A C G A T T G C A
A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C A C G T

RFX3/MA0798.1/Jaspar

Match Rank:9
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---TGCCATKGCMATA
CGTTGCCATGGCAACN
 A C G T A C G T A C G T A C G T A C T G A T G C G A T C C G T A A C G T A C G T A C T G G T A C G T C A G C T A C G A T T G C A
A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

NFIC/MA0161.1/Jaspar

Match Rank:10
Score:0.55
Offset:4
Orientation:forward strand
Alignment:TGCCATKGCMATA
----TTGGCA---
 A C G T A C T G A T G C G A T C C G T A A C G T A C G T A C T G G T A C G T C A G C T A C G A T T G C A
A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T