Information for 1-TCCAGGGTGGTTCTGT (Motif 2)

A C G T T G A C A G T C C G T A A C T G A C T G A C T G A C G T C T A G A T C G C A G T A G C T G T A C C G A T A C T G C G A T
Reverse Opposite:
C G T A G T A C C G T A A C T G C T G A G T C A A T G C A G T C G T C A A G T C A G T C G T A C G C A T A C T G A C T G G T C A
p-value:1e-15
log p-value:-3.527e+01
Information Content per bp:1.750
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.43%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets48.2 +/- 32.3bp
Average Position of motif in Background62.1 +/- 15.7bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:1
Score:0.62
Offset:1
Orientation:forward strand
Alignment:TCCAGGGTGGTTCTGT
-CGTGGGTGGTCC---
 A C G T T G A C A G T C C G T A A C T G A C T G A C T G A C G T C T A G A T C G C A G T A G C T G T A C C G A T A C T G C G A T
A C G T A G T C A T C G G C A T C T A G A C T G T A C G C G A T T C A G C A T G A G C T T A G C G A T C A C G T A C G T A C G T

PB0204.1_Zfp740_2/Jaspar

Match Rank:2
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TCCAGGGTGGTTCTGT
ANTNCCGGGGGGAANTT-
 A C G T A C G T A C G T T G A C A G T C C G T A A C T G A C T G A C T G A C G T C T A G A T C G C A G T A G C T G T A C C G A T A C T G C G A T
C T G A A G T C G A C T G A C T T A G C A T G C T A C G T A C G A C T G C T A G C T A G C T A G C G T A G T C A G A C T G A C T G A C T A C G T

PB0167.1_Sox13_2/Jaspar

Match Rank:3
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-TCCAGGGTGGTTCTGT
GTATTGGGTGGGTAATT
 A C G T A C G T T G A C A G T C C G T A A C T G A C T G A C T G A C G T C T A G A T C G C A G T A G C T G T A C C G A T A C T G C G A T
C T A G C G A T C T G A G A C T A G C T C A T G C A T G C T A G G C A T A C T G C A T G C A T G C G A T G C T A G C A T G C A T C A G T

PB0151.1_Myf6_2/Jaspar

Match Rank:4
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:TCCAGGGTGGTTCTGT----
-----GGNGCGNCTGTTNNN
 A C G T T G A C A G T C C G T A A C T G A C T G A C T G A C G T C T A G A T C G C A G T A G C T G T A C C G A T A C T G C G A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G A C T G G A C T A T C G A T G C A T C G A C T G G A T C A G C T C T A G A C G T A G C T A C T G A T G C A G C T

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:5
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:TCCAGGGTGGTTCTGT-
NNANTGGTGGTCTTNNN
 A C G T T G A C A G T C C G T A A C T G A C T G A C T G A C G T C T A G A T C G C A G T A G C T G T A C C G A T A C T G C G A T A C G T
T C A G A G C T G T C A T G C A C G A T C T A G C T A G C A G T A T C G C A T G C A G T T G A C A C G T G A C T G T C A G C A T C T A G

PB0101.1_Zic1_1/Jaspar

Match Rank:6
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---TCCAGGGTGGTTCTGT
CACCCCCGGGGGGG-----
 A C G T A C G T A C G T A C G T T G A C A G T C C G T A A C T G A C T G A C T G A C G T C T A G A T C G C A G T A G C T G T A C C G A T A C T G C G A T
A T G C G T C A G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G A C T G A T C G A C G T A C G T A C G T A C G T A C G T

PB0025.1_Glis2_1/Jaspar

Match Rank:7
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:TCCAGGGTGGTTCTGT-
-NTNTGGGGGGTCNNNA
 A C G T T G A C A G T C C G T A A C T G A C T G A C T G A C G T C T A G A T C G C A G T A G C T G T A C C G A T A C T G C G A T A C G T
A C G T G T A C G A C T T C A G A C G T C T A G C T A G C A T G C A T G A C T G A C T G A C G T T G A C A T C G C G T A C G A T C T G A

PB0103.1_Zic3_1/Jaspar

Match Rank:8
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----TCCAGGGTGGTTCTGT
CCCCCCCGGGGGGGT-----
 A C G T A C G T A C G T A C G T A C G T T G A C A G T C C G T A A C T G A C T G A C T G A C G T C T A G A T C G C A G T A G C T G T A C C G A T A C T G C G A T
A T G C G T A C G T A C G T A C G T A C A T G C T A G C A C T G T A C G A C T G C A T G C A T G C A T G A T C G A G C T A C G T A C G T A C G T A C G T A C G T

PB0102.1_Zic2_1/Jaspar

Match Rank:9
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----TCCAGGGTGGTTCTGT
CCCCCCCGGGGGGGT-----
 A C G T A C G T A C G T A C G T A C G T T G A C A G T C C G T A A C T G A C T G A C T G A C G T C T A G A T C G C A G T A G C T G T A C C G A T A C T G C G A T
A T G C G T A C G T A C G T A C G T A C A T G C T A G C A C T G A T C G A C T G C A T G C A T G C A T G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

GLIS3/MA0737.1/Jaspar

Match Rank:10
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--TCCAGGGTGGTTCTGT
CTTCGTGGGGGGTC----
 A C G T A C G T A C G T T G A C A G T C C G T A A C T G A C T G A C T G A C G T C T A G A T C G C A G T A G C T G T A C C G A T A C T G C G A T
T A G C C A G T G C A T G A T C T C A G G A C T C T A G A C T G C T A G C T A G A C T G T A C G A G C T T G A C A C G T A C G T A C G T A C G T