Information for 10-KKRRCTKTTMTRARCT (Motif 17)

A C G T A C T G C T G A C T G A A G T C A C G T A C T G A C G T C G A T G T C A C G A T C T G A C G T A C T A G A G T C A C G T
Reverse Opposite:
C G T A A C T G A G T C A C G T A G C T C G T A A C G T C G T A C G T A G T A C C G T A A C T G A G C T A G C T G T A C T G C A
p-value:1e-8
log p-value:-1.977e+01
Information Content per bp:1.807
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.19%
Number of Background Sequences with motif6.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets43.2 +/- 27.4bp
Average Position of motif in Background39.0 +/- 23.8bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0068.1_Hoxc13/Jaspar

Match Rank:1
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:KKRRCTKTTMTRARCT--
--NAATTTTACGAGNTNN
 A C G T A C T G C T G A C T G A A G T C A C G T A C T G A C G T C G A T G T C A C G A T C T G A C G T A C T A G A G T C A C G T A C G T A C G T
A C G T A C G T G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T

PH0012.1_Cdx1/Jaspar

Match Rank:2
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:KKRRCTKTTMTRARCT--
--NAATTTTATTACCTNN
 A C G T A C T G C T G A C T G A A G T C A C G T A C T G A C G T C G A T G T C A C G A T C T G A C G T A C T A G A G T C A C G T A C G T A C G T
A C G T A C G T C G A T G T C A T C G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T G A C T G C T A

Rarg(var.2)/MA0860.1/Jaspar

Match Rank:3
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:KKRRCTKTTMTRARCT-
TGACCTTTCGTGACCTT
 A C G T A C T G C T G A C T G A A G T C A C G T A C T G A C G T C G A T G T C A C G A T C T G A C G T A C T A G A G T C A C G T A C G T
A G C T C T A G C G T A T G A C G T A C A G C T A G C T A G C T T A G C C A T G A G C T A C T G T G C A G T A C T A G C A G C T G A C T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:4
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:KKRRCTKTTMTRARCT
-----TTTTATTRGN-
 A C G T A C T G C T G A C T G A A G T C A C G T A C T G A C G T C G A T G T C A C G A T C T G A C G T A C T A G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:5
Score:0.56
Offset:5
Orientation:forward strand
Alignment:KKRRCTKTTMTRARCT
-----TTTTATKRGG-
 A C G T A C T G C T G A C T G A A G T C A C G T A C T G A C G T C G A T G T C A C G A T C T G A C G T A C T A G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G A C G T

PB0120.1_Foxj1_2/Jaspar

Match Rank:6
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:KKRRCTKTTMTRARCT
-GTNTTGTTGTGANNT
 A C G T A C T G C T G A C T G A A G T C A C G T A C T G A C G T C G A T G T C A C G A T C T G A C G T A C T A G A G T C A C G T
A C G T C A T G A G C T T A C G G A C T G C A T A C T G A C G T G A C T C T A G A G C T A C T G T G C A A G T C T C G A C G A T

TATA-Box(TBP)/Promoter/Homer

Match Rank:7
Score:0.54
Offset:3
Orientation:forward strand
Alignment:KKRRCTKTTMTRARCT
---CCTTTTATAGNC-
 A C G T A C T G C T G A C T G A A G T C A C G T A C T G A C G T C G A T G T C A C G A T C T G A C G T A C T A G A G T C A C G T
A C G T A C G T A C G T A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:8
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:KKRRCTKTTMTRARCT-
-NNANTTTTATTGGNNN
 A C G T A C T G C T G A C T G A A G T C A C G T A C T G A C G T C G A T G T C A C G A T C T G A C G T A C T A G A G T C A C G T A C G T
A C G T C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G

PH0013.1_Cdx2/Jaspar

Match Rank:9
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:KKRRCTKTTMTRARCT--
--NAATTTTATTACCNNN
 A C G T A C T G C T G A C T G A A G T C A C G T A C T G A C G T C G A T G T C A C G A T C T G A C G T A C T A G A G T C A C G T A C G T A C G T
A C G T A C G T C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T

PH0057.1_Hoxb13/Jaspar

Match Rank:10
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:KKRRCTKTTMTRARCT-
-NNAATTTTATTGGNTN
 A C G T A C T G C T G A C T G A A G T C A C G T A C T G A C G T C G A T G T C A C G A T C T G A C G T A C T A G A G T C A C G T A C G T
A C G T A T G C C T A G C G T A C G T A A C G T C G A T C G A T G C A T C T G A G A C T C A G T C T A G T A C G C A T G G A C T A C G T