Information for 1-TGCCAGGTCC (Motif 5)

C A G T A C T G A T G C G T A C G T C A C T A G A C T G C G A T A T G C A T G C
Reverse Opposite:
A T C G A T C G C G T A T G A C A G T C C A G T A C T G A T C G G T A C G T C A
p-value:1e-11
log p-value:-2.689e+01
Information Content per bp:1.745
Number of Target Sequences with motif56.0
Percentage of Target Sequences with motif7.17%
Number of Background Sequences with motif1167.5
Percentage of Background Sequences with motif2.44%
Average Position of motif in Targets45.8 +/- 24.2bp
Average Position of motif in Background48.6 +/- 32.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIX/MA0671.1/Jaspar

Match Rank:1
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--TGCCAGGTCC
CGTGCCAAG---
 A C G T A C G T C A G T A C T G A T G C G T A C G T C A C T A G A C T G C G A T A T G C A T G C
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-TGCCAGGTCC
TTGCCAAG---
 A C G T C A G T A C T G A T G C G T A C G T C A C T A G A C T G C G A T A T G C A T G C
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:TGCCAGGTCC
TGCCAA----
 C A G T A C T G A T G C G T A C G T C A C T A G A C T G C G A T A T G C A T G C
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:4
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--TGCCAGGTCC
GGTGCCAAGT--
 A C G T A C G T C A G T A C T G A T G C G T A C G T C A C T A G A C T G C G A T A T G C A T G C
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T

PH0140.1_Pknox1/Jaspar

Match Rank:5
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----TGCCAGGTCC--
GGATTGACAGGTCNTT
 A C G T A C G T A C G T A C G T C A G T A C T G A T G C G T A C G T C A C T A G A C T G C G A T A T G C A T G C A C G T A C G T
A C T G A C T G C G T A C G A T A C G T C T A G C G T A A G T C C T G A A C T G A T C G G A C T T A G C A C G T G A C T G C A T

PH0104.1_Meis2/Jaspar

Match Rank:6
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----TGCCAGGTCC--
NTATTGACAGGTNNTN
 A C G T A C G T A C G T A C G T C A G T A C T G A T G C G T A C G T C A C T A G A C T G C G A T A T G C A T G C A C G T A C G T
C T A G C A G T G C T A C G A T G A C T C T A G C G T A A G T C C T G A A C T G A T C G G A C T T A G C A G C T G C A T C G A T

CREB3L1/MA0839.1/Jaspar

Match Rank:7
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TGCCAGGTCC---
ATGCCACGTCATCA
 A C G T C A G T A C T G A T G C G T A C G T C A C T A G A C T G C G A T A T G C A T G C A C G T A C G T A C G T
T C G A G A C T C T A G G T A C G A T C C T G A A T G C T C A G C G A T T G A C C T G A A G C T G A T C C T G A

PH0102.1_Meis1/Jaspar

Match Rank:8
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----TGCCAGGTCC--
NTATTGACAGCTNNTT
 A C G T A C G T A C G T A C G T C A G T A C T G A T G C G T A C G T C A C T A G A C T G C G A T A T G C A T G C A C G T A C G T
C T A G A C G T C G T A C G A T A C G T A C T G C G T A A G T C C T G A A C T G A T G C G A C T T A G C A T C G G C A T G C A T

Hic1/MA0739.1/Jaspar

Match Rank:9
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TGCCAGGTCC
ATGCCAACC--
 A C G T C A G T A C T G A T G C G T A C G T C A C T A G A C T G C G A T A T G C A T G C
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T

PH0141.1_Pknox2/Jaspar

Match Rank:10
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----TGCCAGGTCC--
NNATTGACAGGTGCTT
 A C G T A C G T A C G T A C G T C A G T A C T G A T G C G T A C G T C A C T A G A C T G C G A T A T G C A T G C A C G T A C G T
T C G A C A G T C G T A C A G T A G C T C T A G C G T A A G T C C T G A C A T G A T C G A G C T T A C G A G T C G A C T C G A T