Information for 1-GCACAGAKGCCATTYG (Motif 1)

C T A G T A G C C G T A A G T C G T C A C T A G G T C A A C T G T C A G A G T C G T A C C T G A A G C T A C G T A G T C C A T G
Reverse Opposite:
G T A C T C A G C G T A C T G A A G C T A C T G A C T G A G T C T G A C A C G T A G T C A C G T C T A G A C G T A C T G A G T C
p-value:1e-12
log p-value:-2.772e+01
Information Content per bp:1.727
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.90%
Number of Background Sequences with motif4.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets35.0 +/- 19.2bp
Average Position of motif in Background45.5 +/- 18.4bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0130.1_Gm397_2/Jaspar

Match Rank:1
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----GCACAGAKGCCATTYG
AGCGGCACACACGCAA----
 A C G T A C G T A C G T A C G T C T A G T A G C C G T A A G T C G T C A C T A G G T C A A C T G T C A G A G T C G T A C C T G A A G C T A C G T A G T C C A T G
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A A C G T A C G T A C G T A C G T

HNF4G/MA0484.1/Jaspar

Match Rank:2
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---GCACAGAKGCCATTYG
AGAGTCCAAAGTCCA----
 A C G T A C G T A C G T C T A G T A G C C G T A A G T C G T C A C T A G G T C A A C T G T C A G A G T C G T A C C T G A A G C T A C G T A G T C C A T G
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T A C G T A C G T A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:3
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----GCACAGAKGCCATTYG
CANAGNNCAAAGTCCA----
 A C G T A C G T A C G T A C G T C T A G T A G C C G T A A G T C G T C A C T A G G T C A A C T G T C A G A G T C G T A C C T G A A G C T A C G T A G T C C A T G
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T A C G T A C G T A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:4
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:GCACAGAKGCCATTYG
--ACAAAGGNBCCT--
 C T A G T A G C C G T A A G T C G T C A C T A G G T C A A C T G T C A G A G T C G T A C C T G A A G C T A C G T A G T C C A T G
A C G T A C G T G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T A C G T A C G T

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:5
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:GCACAGAKGCCATTYG
-AACAGATGGT-----
 C T A G T A G C C G T A A G T C G T C A C T A G G T C A A C T G T C A G A G T C G T A C C T G A A G C T A C G T A G T C C A T G
A C G T T C G A T C G A A G T C C G T A A C T G G T C A G C A T A C T G A C T G A G C T A C G T A C G T A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:6
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-GCACAGAKGCCATTYG
AAAACAAAGG-------
 A C G T C T A G T A G C C G T A A G T C G T C A C T A G G T C A A C T G T C A G A G T C G T A C C T G A A G C T A C G T A G T C C A T G
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.52
Offset:3
Orientation:forward strand
Alignment:GCACAGAKGCCATTYG
---CAAAGGTCAG---
 C T A G T A G C C G T A A G T C G T C A C T A G G T C A A C T G T C A G A G T C G T A C C T G A A G C T A C G T A G T C C A T G
A C G T A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:8
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--GCACAGAKGCCATTYG
TAGGGCAAAGGTCA----
 A C G T A C G T C T A G T A G C C G T A A G T C G T C A C T A G G T C A A C T G T C A G A G T C G T A C C T G A A G C T A C G T A G T C C A T G
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A A C G T A C G T A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:9
Score:0.52
Offset:-4
Orientation:forward strand
Alignment:----GCACAGAKGCCATTYG
CCAGGAACAG----------
 A C G T A C G T A C G T A C G T C T A G T A G C C G T A A G T C G T C A C T A G G T C A A C T G T C A G A G T C G T A C C T G A A G C T A C G T A G T C C A T G
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:10
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-GCACAGAKGCCATTYG
GGAACAAAGR-------
 A C G T C T A G T A G C C G T A A G T C G T C A C T A G G T C A A C T G T C A G A G T C G T A C C T G A A G C T A C G T A G T C C A T G
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T