Information for 4-GGCAGYAAAG (Motif 3)

A C T G C T A G G T A C C G T A C T A G A G T C C T G A T C G A C G T A A T C G
Reverse Opposite:
A T G C C G A T A G C T A G C T T C A G A G T C A C G T A C T G A G T C G T A C
p-value:1e-20
log p-value:-4.705e+01
Information Content per bp:1.778
Number of Target Sequences with motif58.0
Percentage of Target Sequences with motif6.51%
Number of Background Sequences with motif676.4
Percentage of Background Sequences with motif1.41%
Average Position of motif in Targets52.3 +/- 25.4bp
Average Position of motif in Background47.2 +/- 30.9bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THAP1/MA0597.1/Jaspar

Match Rank:1
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----GGCAGYAAAG
TNNGGGCAG-----
 A C G T A C G T A C G T A C G T A C T G C T A G G T A C C G T A C T A G A G T C C T G A T C G A C G T A A T C G
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:2
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----GGCAGYAAAG
NGTGGGCAT-----
 A C G T A C G T A C G T A C G T A C T G C T A G G T A C C G T A C T A G A G T C C T G A T C G A C G T A A T C G
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GGCAGYAAAG
CTTGGCAA-----
 A C G T A C G T A C G T A C T G C T A G G T A C C G T A C T A G A G T C C T G A T C G A C G T A A T C G
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:4
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GGCAGYAAAG-
-GGAACAAAGR
 A C T G C T A G G T A C C G T A C T A G A G T C C T G A T C G A C G T A A T C G A C G T
A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GGCAGYAAAG
GGGAGGACNG
 A C T G C T A G G T A C C G T A C T A G A G T C C T G A T C G A C G T A A T C G
C T A G A C T G A C T G C G T A A C T G A T C G C G T A A T G C A G C T T A C G

PB0012.1_Elf3_1/Jaspar

Match Rank:6
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----GGCAGYAAAG
AACAAGGAAGTAA--
 A C G T A C G T A C G T A C G T A C G T A C T G C T A G G T A C C G T A C T A G A G T C C T G A T C G A C G T A A T C G
C G A T C G T A G T A C T G C A T G C A C T A G C A T G C G T A G C T A T C A G G A C T C G T A T C G A A C G T A C G T

PB0041.1_Mafb_1/Jaspar

Match Rank:7
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----GGCAGYAAAG--
NCTANGTCAGCAAATTT
 A C G T A C G T A C G T A C G T A C G T A C T G C T A G G T A C C G T A C T A G A G T C C T G A T C G A C G T A A T C G A C G T A C G T
C A G T G A T C A G C T C G T A G C T A T C A G A C G T G T A C C G T A C A T G G A T C C G T A G T C A C G T A G C A T G A C T C G A T

NFIA/MA0670.1/Jaspar

Match Rank:8
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----GGCAGYAAAG
NNTTGGCANN----
 A C G T A C G T A C G T A C G T A C T G C T A G G T A C C G T A C T A G A G T C C T G A T C G A C G T A A T C G
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T

PAX5/MA0014.2/Jaspar

Match Rank:9
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GGCAGYAAAG------
GAGGGCAGCCAAGCGTGAC
 A C G T A C G T A C G T A C T G C T A G G T A C C G T A C T A G A G T C C T G A T C G A C G T A A T C G A C G T A C G T A C G T A C G T A C G T A C G T
T C A G C G T A T C A G C T A G A C T G G A T C C T G A T A C G A G T C T A G C T C G A C T G A A T C G A G T C C T A G C A G T C T A G C T G A G T A C

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:10
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---GGCAGYAAAG
TGAGTCAGCA---
 A C G T A C G T A C G T A C T G C T A G G T A C C G T A C T A G A G T C C T G A T C G A C G T A A T C G
G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A A C G T A C G T A C G T