Information for 5-TTGGTAAATTCTYAGC (Motif 2)

C G A T A C G T A C T G A C T G A G C T C G T A G C T A C G T A A C G T A C G T G A T C A G C T G A C T C G T A A C T G A G T C
Reverse Opposite:
A C T G T A G C C G A T C T G A C T G A C A T G C G T A C G T A C G A T C A G T A C G T T C G A G T A C A G T C C G T A C G T A
p-value:1e-13
log p-value:-3.212e+01
Information Content per bp:1.755
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.88%
Number of Background Sequences with motif0.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets46.5 +/- 27.2bp
Average Position of motif in Background49.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:1
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:TTGGTAAATTCTYAGC
--GGGAATTTCC----
 C G A T A C G T A C T G A C T G A G C T C G T A G C T A C G T A A C G T A C G T G A T C A G C T G A C T C G T A A C T G A G T C
A C G T A C G T A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T A C G T A C G T A C G T

NFAT5/MA0606.1/Jaspar

Match Rank:2
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-TTGGTAAATTCTYAGC
NATGGAAAAN-------
 A C G T C G A T A C G T A C T G A C T G A G C T C G T A G C T A C G T A A C G T A C G T G A T C A G C T G A C T C G T A A C T G A G T C
G C T A C T G A C G A T T C A G C T A G C G T A C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TTGGTAAATTCTYAGC
NNTTGGCANN--------
 A C G T A C G T C G A T A C G T A C T G A C T G A G C T C G T A G C T A C G T A A C G T A C G T G A T C A G C T G A C T C G T A A C T G A G T C
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:4
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-TTGGTAAATTCTYAGC
AATGGAAAAT-------
 A C G T C G A T A C G T A C T G A C T G A G C T C G T A G C T A C G T A A C G T A C G T G A T C A G C T G A C T C G T A A C T G A G T C
T C G A T C G A A G C T A C T G A C T G C G T A C G T A G T C A T G C A G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

DMRT3/MA0610.1/Jaspar

Match Rank:5
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-TTGGTAAATTCTYAGC
NTTGATACATT------
 A C G T C G A T A C G T A C T G A C T G A G C T C G T A G C T A C G T A A C G T A C G T G A T C A G C T G A C T C G T A A C T G A G T C
C G T A C G A T A C G T A C T G G C T A A C G T C G T A A G T C C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:6
Score:0.52
Offset:1
Orientation:forward strand
Alignment:TTGGTAAATTCTYAGC
-NGGGGATTTCCC---
 C G A T A C G T A C T G A C T G A G C T C G T A G C T A C G T A A C G T A C G T G A T C A G C T G A C T C G T A A C T G A G T C
A C G T C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:7
Score:0.52
Offset:0
Orientation:forward strand
Alignment:TTGGTAAATTCTYAGC
TTGGCA----------
 C G A T A C G T A C T G A C T G A G C T C G T A G C T A C G T A A C G T A C G T G A T C A G C T G A C T C G T A A C T G A G T C
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-TTGGTAAATTCTYAGC
CTTGGCAA---------
 A C G T C G A T A C G T A C T G A C T G A G C T C G T A G C T A C G T A A C G T A C G T G A T C A G C T G A C T C G T A A C T G A G T C
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFATC3/MA0625.1/Jaspar

Match Rank:9
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-TTGGTAAATTCTYAGC
AATGGAAAAT-------
 A C G T C G A T A C G T A C T G A C T G A G C T C G T A G C T A C G T A A C G T A C G T G A T C A G C T G A C T C G T A A C T G A G T C
C G T A C T G A G A C T T A C G C A T G T C G A C G T A G C T A C T G A G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFATC1/MA0624.1/Jaspar

Match Rank:10
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-TTGGTAAATTCTYAGC
NNTGGAAANN-------
 A C G T C G A T A C G T A C T G A C T G A G C T C G T A G C T A C G T A A C G T A C G T G A T C A G C T G A C T C G T A A C T G A G T C
C G T A C T G A G A C T C T A G A C T G C T G A C T G A G C T A C G T A G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T