Information for 1-AGTGGGCTAA (Motif 2)

C T G A A C T G C A G T A C T G A C T G A T C G A T G C C G A T G T C A C G T A
Reverse Opposite:
A C G T A C G T C G T A T A C G A T G C A G T C G T A C G T C A G T A C A G C T
p-value:1e-12
log p-value:-2.801e+01
Information Content per bp:1.845
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.27%
Number of Background Sequences with motif27.2
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets59.7 +/- 21.3bp
Average Position of motif in Background49.3 +/- 24.7bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:AGTGGGCTAA---
-GTGGCGTGACNG
 C T G A A C T G C A G T A C T G A C T G A T C G A T G C C G A T G T C A C G T A A C G T A C G T A C G T
A C G T T C A G A C G T C A T G A C T G A T G C A T C G A C G T A T C G C T G A A G T C G A T C C A T G

PB0114.1_Egr1_2/Jaspar

Match Rank:2
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----AGTGGGCTAA-
TGCGGAGTGGGACTGG
 A C G T A C G T A C G T A C G T A C G T C T G A A C T G C A G T A C T G A C T G A T C G A T G C C G A T G T C A C G T A A C G T
A C G T A C T G G A T C A C T G C T A G T C G A C T A G C A G T C T A G C A T G C A T G C G T A G A T C G C A T C T A G A C T G

SREBF1/MA0595.1/Jaspar

Match Rank:3
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:AGTGGGCTAA-
-GTGGGGTGAT
 C T G A A C T G C A G T A C T G A C T G A T C G A T G C C G A T G T C A C G T A A C G T
A C G T T C A G A C G T A T C G C T A G A T C G A T C G A C G T A C T G C G T A A G C T

SREBF2/MA0596.1/Jaspar

Match Rank:4
Score:0.59
Offset:1
Orientation:forward strand
Alignment:AGTGGGCTAA-
-ATGGGGTGAT
 C T G A A C T G C A G T A C T G A C T G A T C G A T G C C G A T G T C A C G T A A C G T
A C G T T C G A A C G T A T C G C T A G A T C G T A C G A C G T A C T G C G T A A G C T

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:AGTGGGCTAA-
-ATGGGGTGAT
 C T G A A C T G C A G T A C T G A C T G A T C G A T G C C G A T G T C A C G T A A C G T
A C G T T C G A A G C T C A T G A C T G A T C G T A C G G A C T A T C G C G T A A G C T

RHOXF1/MA0719.1/Jaspar

Match Rank:6
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:AGTGGGCTAA-
---NGGATTAN
 C T G A A C T G C A G T A C T G A C T G A T C G A T G C C G A T G T C A C G T A A C G T
A C G T A C G T A C G T C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T

NKX2-3/MA0672.1/Jaspar

Match Rank:7
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----AGTGGGCTAA
NTCAAGTGGN----
 A C G T A C G T A C G T A C G T C T G A A C T G C A G T A C T G A C T G A T C G A T G C C G A T G T C A C G T A
A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T A C G T A C G T A C G T A C G T

PH0113.1_Nkx2-4/Jaspar

Match Rank:8
Score:0.56
Offset:-7
Orientation:reverse strand
Alignment:-------AGTGGGCTAA
AATTTCAAGTGGCTTN-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A A C T G C A G T A C T G A C T G A T C G A T G C C G A T G T C A C G T A
C T G A C G T A C G A T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G A G T C G C A T G A C T C G T A A C G T

PH0171.1_Nkx2-1/Jaspar

Match Rank:9
Score:0.56
Offset:-7
Orientation:reverse strand
Alignment:-------AGTGGGCTAA
AANTTCAAGTGGCTTN-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A A C T G C A G T A C T G A C T G A T C G A T G C C G A T G T C A C G T A
C G T A C G T A C A G T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G T A G C G A C T A C G T T C G A A C G T

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:10
Score:0.56
Offset:-7
Orientation:reverse strand
Alignment:-------AGTGGGCTAA
NTNNTTAAGTGGNTNAN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A A C T G C A G T A C T G A C T G A T C G A T G C C G A T G T C A C G T A
T C G A A G C T A G T C A T G C G C A T C G A T C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G T A C A T G