Information for 1-GCGCATTTGT (Motif 3)

T A C G G A T C T A C G T A G C T G C A A C G T A G C T C A G T T A C G C G A T
Reverse Opposite:
G C T A A T G C G T C A T C G A T C G A A C G T A T C G A T G C C T A G A T G C
p-value:1e-13
log p-value:-3.096e+01
Information Content per bp:1.674
Number of Target Sequences with motif40.0
Percentage of Target Sequences with motif4.21%
Number of Background Sequences with motif462.5
Percentage of Background Sequences with motif0.97%
Average Position of motif in Targets47.8 +/- 24.6bp
Average Position of motif in Background48.4 +/- 28.5bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3/MA0514.1/Jaspar

Match Rank:1
Score:0.67
Offset:3
Orientation:forward strand
Alignment:GCGCATTTGT---
---CCTTTGTTTT
 T A C G G A T C T A C G T A G C T G C A A C G T A G C T C A G T T A C G C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T

Sox2/MA0143.3/Jaspar

Match Rank:2
Score:0.65
Offset:3
Orientation:forward strand
Alignment:GCGCATTTGT-
---CCTTTGTT
 T A C G G A T C T A C G T A G C T G C A A C G T A G C T C A G T T A C G C G A T A C G T
A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:3
Score:0.65
Offset:3
Orientation:forward strand
Alignment:GCGCATTTGT-
---CCWTTGTY
 T A C G G A T C T A C G T A G C T G C A A C G T A G C T C A G T T A C G C G A T A C G T
A C G T A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:4
Score:0.65
Offset:3
Orientation:forward strand
Alignment:GCGCATTTGT---
---CCATTGTTNY
 T A C G G A T C T A C G T A G C T G C A A C G T A G C T C A G T T A C G C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T

Bhlha15/MA0607.1/Jaspar

Match Rank:5
Score:0.65
Offset:2
Orientation:forward strand
Alignment:GCGCATTTGT
--CCATATGT
 T A C G G A T C T A C G T A G C T G C A A C G T A G C T C A G T T A C G C G A T
A C G T A C G T T A G C A G T C C G T A A C G T G T C A A C G T A C T G A G C T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:6
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GCGCATTTGT
AGGVNCCTTTGT
 A C G T A C G T T A C G G A T C T A C G T A G C T G C A A C G T A G C T C A G T T A C G C G A T
C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T

Twist2/MA0633.1/Jaspar

Match Rank:7
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GCGCATTTGT-
-ACCATATGTT
 T A C G G A T C T A C G T A G C T G C A A C G T A G C T C A G T T A C G C G A T A C G T
A C G T C T G A G T A C A G T C C G T A A G C T C T G A A C G T A C T G A C G T A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:8
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GCGCATTTGT-----
NNNCCATTGTGTNAN
 T A C G G A T C T A C G T A G C T G C A A C G T A G C T C A G T T A C G C G A T A C G T A C G T A C G T A C G T A C G T
A T C G T G A C A C T G A G T C G A T C C G T A A C G T A C G T T A C G G C A T A T C G A G C T T C A G T G C A T C A G

PB0008.1_E2F2_1/Jaspar

Match Rank:9
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----GCGCATTTGT
NTCGCGCGCCTTNNN
 A C G T A C G T A C G T A C G T A C G T T A C G G A T C T A C G T A G C T G C A A C G T A G C T C A G T T A C G C G A T
C G T A C G A T A T G C C T A G T A G C A T C G A T G C A C T G A T G C A T G C G A C T C G A T G C A T C G T A A G C T

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:10
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GCGCATTTGT-
-ACCATCTGTT
 T A C G G A T C T A C G T A G C T G C A A C G T A G C T C A G T T A C G C G A T A C G T
A C G T T C G A T G A C G T A C C G T A C A G T T G A C A C G T A C T G A G C T A G C T