Information for 9-CCGGGCACAA (Motif 19)

T G A C T A G C T A C G A C T G T C A G T A G C T G C A T G A C C G T A G T C A
Reverse Opposite:
C A G T G C A T A C T G A C G T A T C G A G T C T G A C A T G C A T C G A C T G
p-value:1e-8
log p-value:-2.009e+01
Information Content per bp:1.654
Number of Target Sequences with motif58.0
Percentage of Target Sequences with motif6.11%
Number of Background Sequences with motif1209.5
Percentage of Background Sequences with motif2.54%
Average Position of motif in Targets56.3 +/- 26.6bp
Average Position of motif in Background49.4 +/- 30.2bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.72
Offset:0
Orientation:forward strand
Alignment:CCGGGCACAA
CCAGGAACAG
 T G A C T A G C T A C G A C T G T C A G T A G C T G C A T G A C C G T A G T C A
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G

HIC2/MA0738.1/Jaspar

Match Rank:2
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-CCGGGCACAA
NGTGGGCAT--
 A C G T T G A C T A G C T A C G A C T G T C A G T A G C T G C A T G A C C G T A G T C A
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T

PB0133.1_Hic1_2/Jaspar

Match Rank:3
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----CCGGGCACAA--
NNNNTTGGGCACNNCN
 A C G T A C G T A C G T A C G T T G A C T A G C T A C G A C T G T C A G T A G C T G C A T G A C C G T A G T C A A C G T A C G T
A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C

THAP1/MA0597.1/Jaspar

Match Rank:4
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CCGGGCACAA
TNNGGGCAG--
 A C G T T G A C T A G C T A C G A C T G T C A G T A G C T G C A T G A C C G T A G T C A
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CCGGGCACAA
WDNCTGGGCA---
 A C G T A C G T A C G T T G A C T A G C T A C G A C T G T C A G T A G C T G C A T G A C C G T A G T C A
G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CCGGGCACAA------
CGAAGCACACAAAATA
 T G A C T A G C T A C G A C T G T C A G T A G C T G C A T G A C C G T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------CCGGGCACAA
ACATGCCCGGGCAT--
 A C G T A C G T A C G T A C G T A C G T A C G T T G A C T A G C T A C G A C T G T C A G T A G C T G C A T G A C C G T A G T C A
C T G A T A G C G C T A C G A T A T C G A G T C G A T C G A T C C T A G T C A G T C A G G T A C G C T A C A G T A C G T A C G T

Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CCGGGCACAA
CTTCCNGGAA---
 A C G T A C G T A C G T T G A C T A G C T A C G A C T G T C A G T A G C T G C A T G A C C G T A G T C A
A G T C G A C T C A G T G T A C A G T C A T C G T C A G A C T G G T C A C G T A A C G T A C G T A C G T

PB0030.1_Hnf4a_1/Jaspar

Match Rank:9
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CCGGGCACAA----
CTCCAGGGGTCAATTGA
 A C G T A C G T A C G T T G A C T A G C T A C G A C T G T C A G T A G C T G C A T G A C C G T A G T C A A C G T A C G T A C G T A C G T
A T G C C A G T A G C T T G A C G T C A T C A G C T A G A C T G A C T G A C G T A G T C T G C A G T C A A G C T G C A T C A T G T G C A

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:10
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:CCGGGCACAA---
---GGAACAAAGR
 T G A C T A G C T A C G A C T G T C A G T A G C T G C A T G A C C G T A G T C A A C G T A C G T A C G T
A C G T A C G T A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G