Information for 3-TSCCTCTGASATGRRC (Motif 4)

A C G T A T G C A G T C A G T C C G A T A T G C A C G T A C T G C G T A A T G C C G T A A C G T A C T G C T A G T C G A A G T C
Reverse Opposite:
A C T G A G C T A G T C G T A C C G T A A C G T A T C G A C G T A G T C C G T A A T C G C G T A A C T G A C T G A T C G C G T A
p-value:1e-12
log p-value:-2.830e+01
Information Content per bp:1.875
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.91%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.0 +/- 23.3bp
Average Position of motif in Background52.5 +/- 16.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:1
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:TSCCTCTGASATGRRC
TNCCTTTGATGT----
 A C G T A T G C A G T C A G T C C G A T A T G C A C G T A C T G C G T A A T G C C G T A A C G T A C T G C T A G T C G A A G T C
C A G T A T G C A G T C A G T C A G C T A C G T A C G T T A C G C G T A C G A T T A C G G A C T A C G T A C G T A C G T A C G T

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:2
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:TSCCTCTGASATGRRC
--CCTTTGAWGT----
 A C G T A T G C A G T C A G T C C G A T A T G C A C G T A C T G C G T A A T G C C G T A A C G T A C T G C T A G T C G A A G T C
A C G T A C G T A T G C A G T C A C G T A C G T A C G T A C T G C G T A C G T A A T C G A C G T A C G T A C G T A C G T A C G T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:TSCCTCTGASATGRRC
--CCTTTGATGT----
 A C G T A T G C A G T C A G T C C G A T A T G C A C G T A C T G C G T A A T G C C G T A A C G T A C T G C T A G T C G A A G T C
A C G T A C G T A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T A C G T A C G T A C G T A C G T

INSM1/MA0155.1/Jaspar

Match Rank:4
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-TSCCTCTGASATGRRC
CGCCCCCTGACA-----
 A C G T A C G T A T G C A G T C A G T C C G A T A T G C A C G T A C T G C G T A A T G C C G T A A C G T A C T G C T A G T C G A A G T C
G A T C C T A G T G A C A G T C A G T C A T G C A G T C C G A T C A T G T C G A G T A C G T C A A C G T A C G T A C G T A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:5
Score:0.52
Offset:5
Orientation:forward strand
Alignment:TSCCTCTGASATGRRC
-----TTGACAG----
 A C G T A T G C A G T C A G T C C G A T A T G C A C G T A C T G C G T A A T G C C G T A A C G T A C T G C T A G T C G A A G T C
A C G T A C G T A C G T A C G T A C G T G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T A C G T A C G T A C G T

TCF7L2/MA0523.1/Jaspar

Match Rank:6
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:TSCCTCTGASATGRRC
TNCCTTTGATCTTN--
 A C G T A T G C A G T C A G T C C G A T A T G C A C G T A C T G C G T A A T G C C G T A A C G T A C T G C T A G T C G A A G T C
C A G T A G C T A G T C A G T C A G C T A G C T A C G T A T C G C G T A C G A T T A G C G A C T A G C T G A C T A C G T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:7
Score:0.49
Offset:5
Orientation:forward strand
Alignment:TSCCTCTGASATGRRC
-----TTGACAGG---
 A C G T A T G C A G T C A G T C C G A T A T G C A C G T A C T G C G T A A T G C C G T A A C G T A C T G C T A G T C G A A G T C
A C G T A C G T A C G T A C G T A C G T C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G A C G T A C G T A C G T

SPIB/MA0081.1/Jaspar

Match Rank:8
Score:0.49
Offset:0
Orientation:reverse strand
Alignment:TSCCTCTGASATGRRC
TTCCTCT---------
 A C G T A T G C A G T C A G T C C G A T A T G C A C G T A C T G C G T A A T G C C G T A A C G T A C T G C T A G T C G A A G T C
C G A T C G A T G A T C A G T C A C G T A T G C C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:9
Score:0.49
Offset:0
Orientation:reverse strand
Alignment:TSCCTCTGASATGRRC
TGACCTTGACCT----
 A C G T A T G C A G T C A G T C C G A T A T G C A C G T A C T G C G T A A T G C C G T A A C G T A C T G C T A G T C G A A G T C
G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T A C G T A C G T A C G T A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:10
Score:0.48
Offset:3
Orientation:reverse strand
Alignment:TSCCTCTGASATGRRC
---ARNTGACA-----
 A C G T A T G C A G T C A G T C C G A T A T G C A C G T A C T G C G T A A T G C C G T A A C G T A C T G C T A G T C G A A G T C
A C G T A C G T A C G T T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T A C G T A C G T A C G T