Information for 7-AGCTCAGTGGCAC (Motif 20)

C G T A A C T G A G T C A C G T T A G C C G T A A T C G A C G T A C T G A C T G A G T C C G T A A G T C
Reverse Opposite:
A C T G A C G T A C T G A G T C A G T C C G T A A T G C A C G T A C T G C G T A A C T G A G T C A C G T
p-value:1e-8
log p-value:-2.042e+01
Information Content per bp:1.953
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.61%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets55.5 +/- 22.6bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:1
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AGCTCAGTGGCAC
AGGTCAAGGTCA-
 C G T A A C T G A G T C A C G T T A G C C G T A A T C G A C G T A C T G A C T G A G T C C G T A A G T C
C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A A C G T

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:2
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--AGCTCAGTGGCAC-
GTAGGTCACTGGGTCA
 A C G T A C G T C G T A A C T G A G T C A C G T T A G C C G T A A T C G A C G T A C T G A C T G A G T C C G T A A G T C A C G T
A T C G A G C T C T G A C T A G A C T G A C G T G T A C G C T A A T G C A C G T C T A G C A T G T A C G C G A T A T G C C G T A

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:3
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:AGCTCAGTGGCAC-
--BTGABTGACAGS
 C G T A A C T G A G T C A C G T T A G C C G T A A T C G A C G T A C T G A C T G A G T C C G T A A G T C A C G T
A C G T A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:4
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-AGCTCAGTGGCAC
NAGGTCANTGACCT
 A C G T C G T A A C T G A G T C A C G T T A G C C G T A A T C G A C G T A C T G A C T G A G T C C G T A A G T C
T C A G T C G A C T A G C A T G A C G T A T G C T C G A G A C T A G C T T A C G T G C A G T A C G T A C A G C T

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:AGCTCAGTGGCAC-
-----NTTGGCANN
 C G T A A C T G A G T C A C G T T A G C C G T A A T C G A C G T A C T G A C T G A G T C C G T A A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NFY(CCAAT)/Promoter/Homer

Match Rank:6
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:AGCTCAGTGGCAC
--CCGATTGGCT-
 C G T A A C T G A G T C A C G T T A G C C G T A A T C G A C G T A C T G A C T G A G T C C G T A A G T C
A C G T A C G T A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:7
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:AGCTCAGTGGCAC
--TTAAGTGGT--
 C G T A A C T G A G T C A C G T T A G C C G T A A T C G A C G T A C T G A C T G A G T C C G T A A G T C
A C G T A C G T G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T A C G T A C G T

NFYB/MA0502.1/Jaspar

Match Rank:8
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:AGCTCAGTGGCAC----
--CTGATTGGTCNATTT
 C G T A A C T G A G T C A C G T T A G C C G T A A T C G A C G T A C T G A C T G A G T C C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A T G C A G C T A T C G C G T A A G C T A C G T A C T G A C T G G A C T A G T C T A G C T C G A C A G T C A G T A G C T

NFYA/MA0060.2/Jaspar

Match Rank:9
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----AGCTCAGTGGCAC-
AGAGTGCTGATTGGTCCA
 A C G T A C G T A C G T A C G T C G T A A C T G A G T C A C G T T A G C C G T A A T C G A C G T A C T G A C T G A G T C C G T A A G T C A C G T
G C T A C A T G T G C A T A C G G A C T A C T G A G T C A G C T A T C G C T G A A G C T C G A T T C A G T A C G G A C T A G T C T A G C T C G A

Hic1/MA0739.1/Jaspar

Match Rank:10
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:AGCTCAGTGGCAC
----GGTTGGCAT
 C G T A A C T G A G T C A C G T T A G C C G T A A T C G A C G T A C T G A C T G A G T C C G T A A G T C
A C G T A C G T A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T