Information for 8-AGAGACWGAGGATKGC (Motif 11)

C T G A A T C G C G T A A C T G C G T A A G T C C G A T A T C G C T G A C T A G T C A G T C G A C A G T A C T G A T C G G T A C
Reverse Opposite:
A C T G T A G C G T A C G T C A A C G T A G T C A G T C G A C T A T G C C G T A A C T G G C A T G T A C A C G T A T G C G A C T
p-value:1e-10
log p-value:-2.513e+01
Information Content per bp:1.686
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.67%
Number of Background Sequences with motif39.3
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets50.8 +/- 28.2bp
Average Position of motif in Background64.9 +/- 24.3bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0166.1_Sox12_2/Jaspar

Match Rank:1
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AGAGACWGAGGATKGC
AAACAGACAAAGGAAT--
 A C G T A C G T C T G A A T C G C G T A A C T G C G T A A G T C C G A T A T C G C T G A C T A G T C A G T C G A C A G T A C T G A T C G G T A C
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:AGAGACWGAGGATKGC
CCAGACAG--------
 C T G A A T C G C G T A A C T G C G T A A G T C C G A T A T C G C T G A C T A G T C A G T C G A C A G T A C T G A T C G G T A C
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:AGAGACWGAGGATKGC
BCAGACWA--------
 C T G A A T C G C G T A A C T G C G T A A G T C C G A T A T C G C T G A C T A G T C A G T C G A C A G T A C T G A T C G G T A C
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:AGAGACWGAGGATKGC
CCAGACRSVB------
 C T G A A T C G C G T A A C T G C G T A A G T C C G A T A T C G C T G A C T A G T C A G T C G A C A G T A C T G A T C G G T A C
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T A C G T A C G T A C G T

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:5
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:AGAGACWGAGGATKGC
--TGCCTGAGGCN---
 C T G A A T C G C G T A A C T G C G T A A G T C C G A T A T C G C T G A C T A G T C A G T C G A C A G T A C T G A T C G G T A C
A C G T A C G T G C A T A T C G A T G C A G T C A C G T A T C G T C G A T C A G A T C G A T G C C A G T A C G T A C G T A C G T

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.54
Offset:1
Orientation:forward strand
Alignment:AGAGACWGAGGATKGC
-GAGSCCGAGC-----
 C T G A A T C G C G T A A C T G C G T A A G T C C G A T A T C G C T G A C T A G T C A G T C G A C A G T A C T G A T C G G T A C
A C G T A C T G C G T A A C T G A T G C T G A C G A T C A T C G T G C A A C T G A G T C A C G T A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:7
Score:0.53
Offset:-5
Orientation:reverse strand
Alignment:-----AGAGACWGAGGATKGC
AGGTGNCAGACAG--------
 A C G T A C G T A C G T A C G T A C G T C T G A A T C G C G T A A C T G C G T A A G T C C G A T A T C G C T G A C T A G T C A G T C G A C A G T A C T G A T C G G T A C
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:8
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----AGAGACWGAGGATKGC
CAAATCCAGACATCACA----
 A C G T A C G T A C G T A C G T A C G T C T G A A T C G C G T A A C T G C G T A A G T C C G A T A T C G C T G A C T A G T C A G T C G A C A G T A C T G A T C G G T A C
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A A C G T A C G T A C G T A C G T

TFAP2C(var.2)/MA0814.1/Jaspar

Match Rank:9
Score:0.53
Offset:2
Orientation:forward strand
Alignment:AGAGACWGAGGATKGC
--AGCCTCAGGCA---
 C T G A A T C G C G T A A C T G C G T A A G T C C G A T A T C G C T G A C T A G T C A G T C G A C A G T A C T G A T C G G T A C
A C G T A C G T G T C A T A C G A T G C A G T C A G C T T A G C T C G A T C A G A T C G T A G C C G T A A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.52
Offset:-5
Orientation:forward strand
Alignment:-----AGAGACWGAGGATKGC
AGGTGHCAGACA---------
 A C G T A C G T A C G T A C G T A C G T C T G A A T C G C G T A A C T G C G T A A G T C C G A T A T C G C T G A C T A G T C A G T C G A C A G T A C T G A T C G G T A C
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T