Information for 4-YTATTCACMTAACWAA (Motif 5)

A G T C C G A T G T C A A G C T A C G T A G T C G T C A A G T C G T C A A G C T C T G A G T C A A G T C C G T A C G T A C G T A
Reverse Opposite:
G C A T C G A T C G A T T A C G A C G T A G C T C T G A A C G T T A C G A C G T C T A G T C G A T C G A A C G T C G T A C T A G
p-value:1e-7
log p-value:-1.826e+01
Information Content per bp:1.625
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif57.14%
Number of Background Sequences with motif394.3
Percentage of Background Sequences with motif0.43%
Average Position of motif in Targets33.8 +/- 21.7bp
Average Position of motif in Background50.2 +/- 41.4bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0004.1_Nkx3-2/Jaspar

Match Rank:1
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-YTATTCACMTAACWAA
CATAACCACTTAACAAC
 A C G T A G T C C G A T G T C A A G C T A C G T A G T C G T C A A G T C G T C A A G C T C T G A G T C A A G T C C G T A C G T A C G T A
T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:2
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-YTATTCACMTAACWAA
CTTAACCACTTAAGGAT
 A C G T A G T C C G A T G T C A A G C T A C G T A G T C G T C A A G T C G T C A A G C T C T G A G T C A A G T C C G T A C G T A C G T A
G T A C G C A T C G A T T C G A C T G A T A G C A G T C C G T A G T A C A C G T A G C T C G T A C G T A T A C G A C T G T C G A A C G T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.55
Offset:2
Orientation:forward strand
Alignment:YTATTCACMTAACWAA-
--ATTTGCATAACAATG
 A G T C C G A T G T C A A G C T A C G T A G T C G T C A A G T C G T C A A G C T C T G A G T C A A G T C C G T A C G T A C G T A A C G T
A C G T A C G T G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:4
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:YTATTCACMTAACWAA-
--ATTTGCATAACAAAG
 A G T C C G A T G T C A A G C T A C G T A G T C G T C A A G T C G T C A A G C T C T G A G T C A A G T C C G T A C G T A C G T A A C G T
A C G T A C G T G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G

PB0119.1_Foxa2_2/Jaspar

Match Rank:5
Score:0.54
Offset:4
Orientation:forward strand
Alignment:YTATTCACMTAACWAA---
----AAAAATAACAAACGG
 A G T C C G A T G T C A A G C T A C G T A G T C G T C A A G T C G T C A A G C T C T G A G T C A A G T C C G T A C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C G A T C G A C G T A C G T A G T C A A C G T C T G A C G T A G A T C G T C A G C T A C T G A T A G C T A C G A T C G

mix-a/MA0621.1/Jaspar

Match Rank:6
Score:0.53
Offset:7
Orientation:reverse strand
Alignment:YTATTCACMTAACWAA--
-------NCTAATTAANN
 A G T C C G A T G T C A A G C T A C G T A G T C G T C A A G T C G T C A A G C T C T G A G T C A A G T C C G T A C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A G A T C A C G T C G T A C G T A A C G T A C G T C G T A C T G A G A C T A C G T

PH0001.1_Alx3/Jaspar

Match Rank:7
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:YTATTCACMTAACWAA----
---NTNAGCTAATTAGTTNA
 A G T C C G A T G T C A A G C T A C G T A G T C G T C A A G T C G T C A A G C T C T G A G T C A A G T C C G T A C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G T C C G A T A T G C T C G A C T A G G A T C A G C T G T C A C T G A A G C T A C G T C T G A C T A G A G C T C G A T A G C T G C T A

PB0081.1_Tcf1_1/Jaspar

Match Rank:8
Score:0.52
Offset:2
Orientation:forward strand
Alignment:YTATTCACMTAACWAA---
--ACTTAGTTAACTAAAAA
 A G T C C G A T G T C A A G C T A C G T A G T C G T C A A G T C G T C A A G C T C T G A G T C A A G T C C G T A C G T A C G T A A C G T A C G T A C G T
A C G T A C G T T G C A G A T C A G C T G A C T T C G A C T A G G A C T C G A T G C T A C G T A A G T C G A C T C T G A T C G A C T G A G T C A C T G A

FOXB1/MA0845.1/Jaspar

Match Rank:9
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:YTATTCACMTAACWAA
ATATTTACATA-----
 A G T C C G A T G T C A A G C T A C G T A G T C G T C A A G T C G T C A A G C T C T G A G T C A A G T C C G T A C G T A C G T A
C G T A G A C T T C G A C G A T C G A T A C G T C T G A G A T C G C T A G A C T C G T A A C G T A C G T A C G T A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:10
Score:0.51
Offset:0
Orientation:forward strand
Alignment:YTATTCACMTAACWAA
CGAAGCACACAAAATA
 A G T C C G A T G T C A A G C T A C G T A G T C G T C A A G T C G T C A A G C T C T G A G T C A A G T C C G T A C G T A C G T A
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A