Information for 10-GCAGCGAAGC (Motif 12)

C T A G A G T C C G T A A C T G A G T C C T A G G T C A G C T A A C T G A T G C
Reverse Opposite:
A T C G A G T C C G A T A C G T A G T C T C A G G T A C C G A T A C T G A G T C
p-value:1e-8
log p-value:-2.033e+01
Information Content per bp:1.841
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif2.41%
Number of Background Sequences with motif229.4
Percentage of Background Sequences with motif0.48%
Average Position of motif in Targets43.1 +/- 29.6bp
Average Position of motif in Background50.6 +/- 29.0bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX5/MA0014.2/Jaspar

Match Rank:1
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----GCAGCGAAGC-----
GAGGGCAGCCAAGCGTGAC
 A C G T A C G T A C G T A C G T C T A G A G T C C G T A A C T G A G T C C T A G G T C A G C T A A C T G A T G C A C G T A C G T A C G T A C G T A C G T
T C A G C G T A T C A G C T A G A C T G G A T C C T G A T A C G A G T C T A G C T C G A C T G A A T C G A G T C C T A G C A G T C T A G C T G A G T A C

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GCAGCGAAGC------
GCAGCCAAGCGTGACN
 C T A G A G T C C G T A A C T G A G T C C T A G G T C A G C T A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

POL008.1_DCE_S_I/Jaspar

Match Rank:3
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:GCAGCGAAGC
----NGAAGC
 C T A G A G T C C G T A A C T G A G T C C T A G G T C A G C T A A C T G A T G C
A C G T A C G T A C G T A C G T T A C G T A C G T G C A T C G A T A C G T G A C

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:4
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GCAGCGAAGC-----
SCAGYCADGCATGAC
 C T A G A G T C C G T A A C T G A G T C C T A G G T C A G C T A A C T G A T G C A C G T A C G T A C G T A C G T A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

POL013.1_MED-1/Jaspar

Match Rank:5
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:GCAGCGAAGC
----CGGAGC
 C T A G A G T C C G T A A C T G A G T C C T A G G T C A G C T A A C T G A T G C
A C G T A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C

PB0034.1_Irf4_1/Jaspar

Match Rank:6
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GCAGCGAAGC----
CGTATCGAAACCAAA
 A C G T C T A G A G T C C G T A A C T G A G T C C T A G G T C A G C T A A C T G A T G C A C G T A C G T A C G T A C G T
T G A C C T A G C G A T C G T A G A C T A G T C C T A G T C G A C G T A C G T A T A G C G A T C C T G A G T C A C G T A

PB0091.1_Zbtb3_1/Jaspar

Match Rank:7
Score:0.56
Offset:-6
Orientation:reverse strand
Alignment:------GCAGCGAAGC-
NNNANTGCAGTGCNNTT
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G A G T C C G T A A C T G A G T C C T A G G T C A G C T A A C T G A T G C A C G T
T G A C T A C G T A C G T G C A T C G A A C G T T A C G G T A C C G T A A T C G A G C T C A T G T A G C T A C G T C G A G A C T G A C T

POL009.1_DCE_S_II/Jaspar

Match Rank:8
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GCAGCGAAGC
CACAGN-----
 A C G T C T A G A G T C C G T A A C T G A G T C C T A G G T C A G C T A A C T G A T G C
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GCAGCGAAGC
-CAGCC----
 C T A G A G T C C G T A A C T G A G T C C T A G G T C A G C T A A C T G A T G C
A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:10
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----GCAGCGAAGC-----
NGTGTTCAVTSAAGCGKAAA
 A C G T A C G T A C G T A C G T A C G T C T A G A G T C C G T A A C T G A G T C C T A G G T C A G C T A A C T G A T G C A C G T A C G T A C G T A C G T A C G T
A G C T T A C G C G A T T C A G A G C T A C G T G A T C C T G A T A G C A G C T A T G C C T G A C G T A A T C G A G T C C T A G A C T G C T G A G T C A T C G A